Tdou017524.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010001412.1:60928-71926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.015 3.5 10.5 1.9 2 21 194 213 193 215 0.93 2 30 0.002 0.48 13.2 3.0 1 23 233 256 233 256 0.97 3 30 0.00018 0.042 16.6 2.4 2 23 263 285 262 285 0.96 4 30 0.063 15 8.5 0.2 1 23 427 449 427 449 0.95 5 30 0.023 5.5 9.9 4.3 1 23 467 490 467 490 0.90 6 30 0.15 35 7.4 1.0 1 23 545 568 545 568 0.95 7 30 0.082 19 8.2 0.7 1 23 574 596 574 596 0.97 8 30 0.85 2e+02 5.0 1.8 1 23 605 627 605 627 0.94 9 30 0.00018 0.043 16.5 0.2 1 23 687 710 687 710 0.97 10 30 0.29 69 6.4 2.1 2 20 759 779 758 783 0.83 11 30 0.95 2.3e+02 4.8 0.1 2 23 792 814 792 814 0.93 12 30 0.1 24 7.9 0.3 2 23 821 843 820 843 0.94 13 30 7.3e-05 0.017 17.8 1.4 1 23 850 872 850 872 0.98 14 30 0.018 4.3 10.2 1.8 1 23 957 980 957 980 0.94 15 30 0.0015 0.35 13.7 0.3 2 23 987 1009 986 1009 0.92 16 30 0.98 2.3e+02 4.8 0.9 2 21 1035 1054 1034 1055 0.92 17 30 6.1 1.4e+03 2.3 0.1 11 23 1080 1092 1069 1093 0.79 18 30 0.00024 0.057 16.1 0.5 1 23 1099 1123 1099 1123 0.97 19 30 0.52 1.2e+02 5.7 1.3 2 23 1131 1153 1131 1153 0.93 20 30 0.16 38 7.3 4.4 1 23 1191 1214 1191 1214 0.97 21 30 0.0095 2.3 11.1 0.3 3 23 1220 1241 1219 1241 0.95 22 30 0.0055 1.3 11.9 0.2 1 23 1283 1306 1283 1306 0.97 23 30 8.7e-05 0.021 17.5 1.2 1 23 1316 1340 1316 1340 0.91 24 30 2.2 5.2e+02 3.7 2.2 2 23 1402 1424 1401 1424 0.93 25 30 1.9 4.4e+02 3.9 0.1 2 23 1431 1452 1430 1452 0.95 26 30 9.1 2.2e+03 1.7 1.0 1 23 1466 1488 1466 1488 0.88 27 30 2.8 6.7e+02 3.3 0.2 2 23 1508 1530 1508 1530 0.95 28 30 0.0016 0.39 13.5 0.1 1 23 1547 1569 1547 1569 0.95 29 30 0.00016 0.038 16.7 0.0 1 23 1588 1611 1588 1611 0.95 30 30 0.022 5.3 10.0 0.7 1 21 1615 1636 1615 1637 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTCGATACGGAGAGCTACATGCAGCTTTGTCGTCTGTGCGCGTCTTATCAAGCCATCAAAATGGAAATCTACGGTAAAGAGGGAACGGGACGAAATTTGGTGGAGAAGATTGAGATCTGTCTTCCGTTCAAGGTTTGCCAAGACGACCATCTCCCCAAGTCACTCTGCTACCGCTGCATGTACCTTCTGGAGAACTTCTACGACTTCCGTAAAAACTGTGTCAACTCTGTGTCTCTGCTGGAGAGCTGTCTCACCGACCCGGAAGGGCTGGAAGTGAATCCGGAACTGAGACTGGAGTACGAACGTCTCCAGAGTCAACTGCGGGAAGTGAAATGTCGCAACAAGAAGGGGGAGGTCGGAGAGACGGACAACTCCATGCCCCGGTTGGAGCCGCAGGTCCCTGTGCCGAACGTGGTGGGCCGTAACGGGCGTCGACCCTCCGGCGAACCCGCCAAGCAACAAGCCCATTCCTCTGCGCCCGTCATGGACGACACTGGAGACTACCACGAGGAAGGCGGAAGTTGGGACGTTCCCACGCTCAAACGAAGCTCCAAGAAGCCAACATCGCTGCTGTCCTGCCCCTACTGCACCAAGGCCTTCTACTCCCAAGGCCGACTCTCACTCCACATAAAGTGCCACAATGGAGAAGAGGTGCCCGGCGCTGGGGCCAACACCGCGGGCAAACGGCCCTTCTCGTGCGACCTGTGTCATCGCTCCTACACACTCTCCAAGCACCTGTGGGGGCACATGAACTCTGCTCACAAGGGAGACCCCGCTGTTACGTGTCCTGTGTGTGGTCGGGTGTGTTCCACCTGCGCCAACTTGGAGGAACACAAGCGCTCCAAACACGGTCAGTCCCGCCTCCTGCTGTCCATGTTGTACGCAACACTAGTGCTTGTGTCGAGGTGTACATGTGTGTTGTGTTTGTGCGCAGGTCTAGAGGACGGCGAGGTGGTGGAGTCCACCTACACTGACAATGCCGAAGCCAAGGAGCCTCTGGAGCGCGCGTTCAAGTCTGAGTCGGAGTTGCGGGTCAAGCGGCAGGAGAGAGCCGGGGGCGGGAAGACTCAGGGGGGGGAGGTGAGCCTTCTCAAGCAGACGCTGCTCAAGTCTCGTAAGCGAGCAGCAAACCGGGACGGAGAGGAGGTAGATGTCGAGGCGGCGAAGAAGCATGCCCCTGAGGCGGTGCCTCCGGACAGCAACCCTGGGAACCGCCGGAAGAGCTCCAAGCCGAGGAAGATCGCCCGATGCGAGAGCGGAGAAGAGGAGGAGTACACTTGCGAGGTCTGCTTCGACACTTTCCCCAGCAGCGAGCATCTCGTGGAGCACGGAGCCGTTCATTGTGGCTACGAGGAAGAAGCGTTGGAGACCTCCGGTGACAGAGACAAGCCGTTCACTTGTCTTCTCTGTGACAAGAGCTTCTCCGTACGTCAAGCACTGAGCCGGCATTTCCACGCGTGCCACGGCATTGACCCGTCGGATGTGGACGTGTTTGGGTCTACGTCCGACCCGCTCCACAAGCAGATGTTTGTGCCCTCTGCGGAAGACATGATGGAGATGGAGACTGGGATAGTGGGAGGGGGGGCAGAGGTGAACTCTGGCCAGGACGCCTCAGGAAAACAGTTCTTCTCCTGTGAGGTATGCATCAGAGAGTTTCATGACAGAGGCAGCTTGTGGCTGCACATGCTGCACGCCCACCGTGACCAGGCTGGGTTTGCCTGCGGGGTGTGTCTCAAGATCTGCGGCAACAATGACCACTTGGGTGCGCACTGGCGGCAGCATGTCGGAGGGGCCGACAATAGACGATACGTGTGCACCGTGTGCGGCCGACAGCACGACACCCGCAAGAAGCTGGTTCACCATGTGGGCATTCACGCCCTGGAGAATGGGGAGGGGGGCTTTTTCGACCCCGAGAGCTTTGTTGTTCAGAACCAGGCGTTCTACAGCTCAGAGCACAAAGAAAAGGATGGAGGGGTTGTGTCTGACTACGGCGCGTCGAGCGGCTCGGACCGTTGGGCTTTGGAGAGCCCGACTCAAACACACGCTGATAACTACTCCTGTGAGATATGCTACAAATCATTCCCCTCCGAGGAGGGTCTGGTGAAGCACAAGAGGAACGCCCACAAGGAGGAGCTCGCAGGGGGAGGAACGCTACCTCGCGGCTCATATCAACTGTTCTTTGTGTGCGAGCTGTGCGGCTCTTCGCACGGCTCCAAGTCTGAACGCTGGCGGCACGTGTATCAGACCCATTGTGGTCAGGCGACCCTCACCTGCGACCGTCCCACCTGCGGGAAGGTGTTTACAACGCAGGCGCTTCGAACAGAACATTGTGCCTCACATCATCAGAAGCAGGGGGCGGTTCCCAACACTTGTGAAGTGTGCGGGAAGCTGTGGGGGTCCCGCGTTGACTTTTGGAAGCACATGATGGGGGTCCACCCGGACTTGGTGGCGCTCACCTGCGGGGTCTGCCTCAAGGTGCTGTGTGACTTGGTGGAGCTGAAGACACATGTCCGCGCTACACATTGGCCGCTCACGAACGAGTTCTCGTGTGACTTATGTGGTCGGCCGTACTCCAACAAGTCCAAGATGTCGCGCCACCGGAAGATACACGGGGACGACTCCCAAGACCCTCGTATTTTGGAAAACACAAACTCTTCAAAGAAACACTTGTCCTTGTCAGGCGCAAAGAATCCGGATCTGATGAAGAAGAGCATTTTGAAAATTCCTGATCCATCTGCGGTCGGATTGTCCTTGGACCCCAAGAGGCTCCTGCACCCCACCCTGTGGTGCGAGACTTGCCCTCATCTGCACTTTACAACTGTGGCGCAGCTGGGCCACCACCGGCGTACCGTACACAACCTGTATCCCTGCGACCTCTGCACCAAGTTCTACAGCCGCACCACGCATCTGCTGTACCATGTGGTGAAGGCACACAGCAACCACCCTGAGCTGAGGTGCTCGGTCTGCGGCAAGATGTGCCGCAGCAAGTCCGCTGTGGCCGCTCATATCGCCGCCAAGCACTTTCCTCGGGAGGCAAAGAAGCAGAATCATCAGCCCAGCTTCAAGTCCGCGGCAACCAAGAAACCCTCGACACAAACATGTTCACTTTGTTCCAAGACGTTCTGGAAGCGCTCGGTCTATAGGAGGCACTACAAAGCTTGTCGTGCCAAGAACGCGTTCAAACCTGCGCCAGAGGCCTTGGTGTGTGAAGTCTGCCCTGATATCGCGCCGACCACCAAGACTGAACTCATGACGCACATCCGTGACCATCATGCGGGGCATCCCAGCTTCTGTTGTCCGGTGGAGGGCTGTGGCCGAATGGTCCGCAGTCGGAGTGATCTGGAGCTGCACCAAAAGATGCACGACGAGGGAAAGCCCCACGCGACTTGCGACCTGTGTGGGAACGTGTACAACCACGAGTCGCGCGCCAGGAAGCACATGTTCCTCTATCACAAACGCGCAGAGCTGGCGGGACTCTGTGGGGTGTGCCTCAAAAACTTGCCCGACATGGAGCGCCTCAAGGAACACGTGATTGCTGAACACCCGGCTAACTTGGAAGCGCCGTTCACATGCCAGGTGTGTGCCAAGACGCTCTCTAACAACTCCAAGGTGTGCCAGCATGTATTGACGTGCCACCCTTCAGTTGTGGCGTGTCGAACGTGTCTGCAGGTGTTTCCTGACCGCTCAGATCTGCAGACGCACAGGAAGGAGGTCCATGACTGCTACGATATGGTAAGAGAAGACCAAACCACCGACAATGTTAAAGATGAAATGGAAAAGAAACCAGAGGTGGCCCCACTCAAAGAGGGCGAGTCCCCACCTAAGCGTTCCAGACGGTCCTACGAGTGCGACTCTTGCGGAGAACAACTGACGTCCCCGTCGTTGCTGAGCGACCACAAGAAACGATCACATAGTTTGCAGGTGAACGAAACGAAACCCTATCACTGCGGTGTCTGCGATAAGAACTTCTCTAACAAGACCAGTTACTGGAAGCACATCAACTCTCCAATACACCTCAACACCAAAATGATAAAATCAGCCTCTTCAAACAGCGCCAGAGGCATCTCGCCTATAGACAACAAGATACCATTGGTGGTGTTACCTAATCTGGGTGAGCTGGATCTGAAGTTAGAGGCAAGTCCTGCCAAGACCACTCGCCCCGAGTCCAAGAAGGGGTACGATAGCTCTGGAGCGTGTTTCTGTTCTGTGTGCGGCAAGCAGTGGCCCGCCAAGAGGCACCTCTGGCAGCACCTGATTCGCTATCACCAGCGGGAGGCGGCGGTCACCTGCGGCGTGTGCCTGGCGGTCTGCGTGGACTACCCCGACCTGTCTCGCCACCTGGCGCAGCACCAATCATCGGCCCATCGCCCCAGAGAGGGGACCAACAACTTTGTGTGCCAGACTTGTGGGCGCTACCACAACGCCCGCGCCAAACTGCAGCAGCACGCTACTATACACGTGGTACTGGGCCCCGGGCCGGAAGGGCAACCTCCGTCCCTCGGGGACCTCCGGGCTACCTGCGACACTTGTCTGGAAAGTTTCCCCGACATGGAGGCCCTGGGGTTTCACCAGCGCACGCAGCACTGTGGCGATACAGACATCCTCACGCCCAAGATGGAGATGACGATGTTGTTTGACTGCGTGGAATGCGGGCTAGCTTTCAGCTCCGAGAGGGACTTGAACACTCACGAGGGCACTCACAGAAGCCTCCAAGGATCCTTCAACTTTAATGAcgaggatgatgatgatgaagcaTTCCCTTGCGGCAAGTGCGGAGAAGTGTTTGACGATTCGGACGCGCTGATAGAGCACATCCAGGGCGCGCATGGCAAGGTCTTTGCATGTCGACGCTGCGGGGACAAGTCCTTTTCGACCTACCTCAACTTGACAAAGCACTATCGGGTGTGTAAGTCCAAGGGGGGGAGGAATCTGAAGGAGGACAGGACGCTCAGACCTGCTGAGGATCCTTCAAACATGGCTCCCTTAGACGAGAACATGGAGTCGTTATTAATAAAGGAAGAGTTGATGGAAACAGACACGGGGAGTGATCCTCTCGACGAAGCTGAGGACTCTCCTCTCTCGTCCTCCGGAATACAGGTCAGGAGAGACTTCAGTTGTTTGATGGATGAAACGGGAACAAATCCCTCACCTTTACAGACGGAAAACTGTGAATCTCTCCCCAACGGAGATTTGGGAGATTTGTCCGAAAGTGAACTCGATGAATCAAATGAAAATTCTATCACAAAACATGAACCCAACGAGGAACCTTTCCAGGGTGGACCCGAATCGGTCGGAAGAAGTACGGAGGATCTGGCGGACACACTGGGGGCAGATATTTCAAACGGAAGCACGGATTCTTGCGGTCTTGTACCGGGTACATCGACCAAACTCCAGACTTTAGTCGAGGAGCAGATGGACGCTCTGGGGACAAACAAACTGGACCACAGAGGGAATTCTTGGGGTATCGACAACGAAGATTGTGCGGGGACAGATATCGATGAGCGGACCACCCCTCGCGGGGACCAATTGTCGGCGGAAGCTACGAGTGACGAGTATTTGAACTCATTAGACAACGCGTTGGATATATTAGAGGCCCAGAATGTGTGA
- Protein Sequence
- MSFDTESYMQLCRLCASYQAIKMEIYGKEGTGRNLVEKIEICLPFKVCQDDHLPKSLCYRCMYLLENFYDFRKNCVNSVSLLESCLTDPEGLEVNPELRLEYERLQSQLREVKCRNKKGEVGETDNSMPRLEPQVPVPNVVGRNGRRPSGEPAKQQAHSSAPVMDDTGDYHEEGGSWDVPTLKRSSKKPTSLLSCPYCTKAFYSQGRLSLHIKCHNGEEVPGAGANTAGKRPFSCDLCHRSYTLSKHLWGHMNSAHKGDPAVTCPVCGRVCSTCANLEEHKRSKHGQSRLLLSMLYATLVLVSRCTCVLCLCAGLEDGEVVESTYTDNAEAKEPLERAFKSESELRVKRQERAGGGKTQGGEVSLLKQTLLKSRKRAANRDGEEVDVEAAKKHAPEAVPPDSNPGNRRKSSKPRKIARCESGEEEEYTCEVCFDTFPSSEHLVEHGAVHCGYEEEALETSGDRDKPFTCLLCDKSFSVRQALSRHFHACHGIDPSDVDVFGSTSDPLHKQMFVPSAEDMMEMETGIVGGGAEVNSGQDASGKQFFSCEVCIREFHDRGSLWLHMLHAHRDQAGFACGVCLKICGNNDHLGAHWRQHVGGADNRRYVCTVCGRQHDTRKKLVHHVGIHALENGEGGFFDPESFVVQNQAFYSSEHKEKDGGVVSDYGASSGSDRWALESPTQTHADNYSCEICYKSFPSEEGLVKHKRNAHKEELAGGGTLPRGSYQLFFVCELCGSSHGSKSERWRHVYQTHCGQATLTCDRPTCGKVFTTQALRTEHCASHHQKQGAVPNTCEVCGKLWGSRVDFWKHMMGVHPDLVALTCGVCLKVLCDLVELKTHVRATHWPLTNEFSCDLCGRPYSNKSKMSRHRKIHGDDSQDPRILENTNSSKKHLSLSGAKNPDLMKKSILKIPDPSAVGLSLDPKRLLHPTLWCETCPHLHFTTVAQLGHHRRTVHNLYPCDLCTKFYSRTTHLLYHVVKAHSNHPELRCSVCGKMCRSKSAVAAHIAAKHFPREAKKQNHQPSFKSAATKKPSTQTCSLCSKTFWKRSVYRRHYKACRAKNAFKPAPEALVCEVCPDIAPTTKTELMTHIRDHHAGHPSFCCPVEGCGRMVRSRSDLELHQKMHDEGKPHATCDLCGNVYNHESRARKHMFLYHKRAELAGLCGVCLKNLPDMERLKEHVIAEHPANLEAPFTCQVCAKTLSNNSKVCQHVLTCHPSVVACRTCLQVFPDRSDLQTHRKEVHDCYDMVREDQTTDNVKDEMEKKPEVAPLKEGESPPKRSRRSYECDSCGEQLTSPSLLSDHKKRSHSLQVNETKPYHCGVCDKNFSNKTSYWKHINSPIHLNTKMIKSASSNSARGISPIDNKIPLVVLPNLGELDLKLEASPAKTTRPESKKGYDSSGACFCSVCGKQWPAKRHLWQHLIRYHQREAAVTCGVCLAVCVDYPDLSRHLAQHQSSAHRPREGTNNFVCQTCGRYHNARAKLQQHATIHVVLGPGPEGQPPSLGDLRATCDTCLESFPDMEALGFHQRTQHCGDTDILTPKMEMTMLFDCVECGLAFSSERDLNTHEGTHRSLQGSFNFNDEDDDDEAFPCGKCGEVFDDSDALIEHIQGAHGKVFACRRCGDKSFSTYLNLTKHYRVCKSKGGRNLKEDRTLRPAEDPSNMAPLDENMESLLIKEELMETDTGSDPLDEAEDSPLSSSGIQVRRDFSCLMDETGTNPSPLQTENCESLPNGDLGDLSESELDESNENSITKHEPNEEPFQGGPESVGRSTEDLADTLGADISNGSTDSCGLVPGTSTKLQTLVEEQMDALGTNKLDHRGNSWGIDNEDCAGTDIDERTTPRGDQLSAEATSDEYLNSLDNALDILEAQNV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448853;
- 90% Identity
- iTF_01450847;
- 80% Identity
- -