Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010005105.1:29450-40596[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.014 3.2 10.6 1.9 2 21 194 213 193 215 0.93

2 29 0.0019 0.44 13.3 3.0 1 23 233 256 233 256 0.97

3 29 0.00017 0.038 16.6 2.4 2 23 263 285 262 285 0.96

4 29 0.0017 0.37 13.5 0.2 1 23 400 422 400 422 0.95

5 29 0.022 4.9 10.0 4.3 1 23 440 463 440 463 0.90

6 29 0.14 32 7.4 1.0 1 23 518 541 518 541 0.95

7 29 0.058 13 8.6 0.6 1 23 547 569 547 569 0.97

8 29 0.82 1.8e+02 5.0 1.8 1 23 578 600 578 600 0.94

9 29 0.0025 0.56 12.9 0.1 1 23 660 683 660 683 0.97

10 29 0.28 63 6.5 2.1 2 20 732 752 731 756 0.83

11 29 0.91 2e+02 4.9 0.1 2 23 765 787 765 787 0.93

12 29 0.059 13 8.6 0.3 2 23 794 816 793 816 0.94

13 29 7e-05 0.016 17.8 1.4 1 23 823 845 823 845 0.98

14 29 0.017 3.9 10.3 1.8 1 23 930 953 930 953 0.94

15 29 0.0066 1.5 11.6 0.5 2 23 960 982 959 982 0.92

16 29 0.94 2.1e+02 4.8 0.9 2 21 1008 1027 1007 1028 0.92

17 29 5.9 1.3e+03 2.3 0.2 11 23 1053 1065 1043 1066 0.78

18 29 0.00094 0.21 14.3 0.9 1 23 1072 1096 1072 1096 0.91

19 29 0.5 1.1e+02 5.7 1.3 2 23 1104 1126 1104 1126 0.93

20 29 0.15 34 7.3 4.4 1 23 1164 1187 1164 1187 0.97

21 29 0.01 2.3 11.0 0.3 3 23 1193 1214 1192 1214 0.95

22 29 0.0054 1.2 11.9 0.3 1 23 1245 1268 1245 1268 0.97

23 29 0.00036 0.08 15.6 2.7 1 23 1278 1302 1278 1302 0.91

24 29 2.1 4.7e+02 3.7 2.2 2 23 1364 1386 1363 1386 0.93

25 29 1.4 3.2e+02 4.3 0.3 2 23 1393 1414 1392 1415 0.93

26 29 0.054 12 8.7 0.1 2 23 1469 1491 1469 1491 0.97

27 29 0.00088 0.2 14.3 0.1 1 23 1508 1530 1508 1530 0.96

28 29 0.00015 0.034 16.8 0.0 1 23 1551 1574 1551 1574 0.95

29 29 0.021 4.8 10.0 0.7 1 21 1578 1599 1578 1600 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.014	3.2	10.6	1.9	2	21	194	213	193	215	0.93
2	29	0.0019	0.44	13.3	3.0	1	23	233	256	233	256	0.97
3	29	0.00017	0.038	16.6	2.4	2	23	263	285	262	285	0.96
4	29	0.0017	0.37	13.5	0.2	1	23	400	422	400	422	0.95
5	29	0.022	4.9	10.0	4.3	1	23	440	463	440	463	0.90
6	29	0.14	32	7.4	1.0	1	23	518	541	518	541	0.95
7	29	0.058	13	8.6	0.6	1	23	547	569	547	569	0.97
8	29	0.82	1.8e+02	5.0	1.8	1	23	578	600	578	600	0.94
9	29	0.0025	0.56	12.9	0.1	1	23	660	683	660	683	0.97
10	29	0.28	63	6.5	2.1	2	20	732	752	731	756	0.83
11	29	0.91	2e+02	4.9	0.1	2	23	765	787	765	787	0.93
12	29	0.059	13	8.6	0.3	2	23	794	816	793	816	0.94
13	29	7e-05	0.016	17.8	1.4	1	23	823	845	823	845	0.98
14	29	0.017	3.9	10.3	1.8	1	23	930	953	930	953	0.94
15	29	0.0066	1.5	11.6	0.5	2	23	960	982	959	982	0.92
16	29	0.94	2.1e+02	4.8	0.9	2	21	1008	1027	1007	1028	0.92
17	29	5.9	1.3e+03	2.3	0.2	11	23	1053	1065	1043	1066	0.78
18	29	0.00094	0.21	14.3	0.9	1	23	1072	1096	1072	1096	0.91
19	29	0.5	1.1e+02	5.7	1.3	2	23	1104	1126	1104	1126	0.93
20	29	0.15	34	7.3	4.4	1	23	1164	1187	1164	1187	0.97
21	29	0.01	2.3	11.0	0.3	3	23	1193	1214	1192	1214	0.95
22	29	0.0054	1.2	11.9	0.3	1	23	1245	1268	1245	1268	0.97
23	29	0.00036	0.08	15.6	2.7	1	23	1278	1302	1278	1302	0.91
24	29	2.1	4.7e+02	3.7	2.2	2	23	1364	1386	1363	1386	0.93
25	29	1.4	3.2e+02	4.3	0.3	2	23	1393	1414	1392	1415	0.93
26	29	0.054	12	8.7	0.1	2	23	1469	1491	1469	1491	0.97
27	29	0.00088	0.2	14.3	0.1	1	23	1508	1530	1508	1530	0.96
28	29	0.00015	0.034	16.8	0.0	1	23	1551	1574	1551	1574	0.95
29	29	0.021	4.8	10.0	0.7	1	21	1578	1599	1578	1600	0.93

Sequence Information

Coding Sequence: ATGTCTTTCGATACGGAGAGTTACATGAAGCTTTGTCGTCTGTGTGCTTCTTATCAAGCCATCAAAATGGAAATCTACGGTAAAGAGGGAATGGGAAGAAATTTGGTGGAGAAGATTGAGATCTGTCTTCCGTTCAAGgTCTGCGAAGATGACCATCTCCCCAAGTCACTCTGCTACCGCTGCATGTACCTCCTGGAGAACTTCTACGACTTCCGTAAAAACTGCGTCAACTCTGTGTCTCTGCTGGAGAGCTGTCTCACTGACCCGGAAGGGCTGGAAGTGAATCCAGAACTGAGACTGGAGTACGAACGTCTCCAGAGTCAACTGCGGGAAGTGAAAGGTCGCAACAAGAAAGGGGATGTTGGCGAGACGGACAACTCCATGCCCCGATTGGAGCCACAGGTCCCTGTGCTGAGCGTGGTGGGCCGTACAGGGCGTCGGCCCTCTGGGGAACCCGCCAAGCGACAAACCCATTCCTCTGCGCCCGTCGTGGACGACTCTGGAGACTATCACGAGGAAGGTGGGAATTGGGACGTGCCCCCGCTCAAAAGAAGCTCTAAGAAGCCAACATCGCTACTGTCGTGTCCCTACTGCACCAAGGCCTTCTACTCCCAAGGCCGACTCTCGCTCCACATAAAGTGCCACAATGGAGAAGAGGTGCCCGGCGCTGGGGCCAACACGGCGGGCAAGCGGCCCTTCTCATGCGACCTATGTCATCGCTCCTACACGCTCTCCAAGCACCTGTGGGGACACATGAACTCTGCTCACAAAGGAGACCCCGCTGTGACGTGTCCTGTGTGTGGTCGGGTCTGCTCCACTTGCGCCAACCTGGAGGAACACAAGCGTTCCAAACACGGTCTAGAGGATGGCGAGGTGGTGGACTCCACCTACACCGACAATGCCGAAGCCAAGGAGCCTCTGGAGCGCGCGTTCAAGTCCGAGTCAGAGCTGCGTGTCAAGCGGCAGGAGAGAGCCGGGAGCGTGAAGACTCAGGGGGGGGAGGTGAGCCTTCTCAAGCAGACACTGCTCAAGTCTCGTAAGCGAGCAGCAAATCAGGATGGAGAGGAGATGGACGTCGAGGCGGCGAAGAAGCATGCCCCTGAGGCAGCACCTTCAGACAGCAACCCCGGGAACCGCCGCAAGAGCTCCAAGCCGAGGAAGATTGCCCGATATGAGAGCGGAGAAGAGGAGGAGGAGTACACTTGCGAGGTCTGCTTCGAGACTTTCCCCAGCAGCGAACATCTCGTGGAACATGGAGCTGTCCATTGTGGCTACGAGGAAGAAGCATCGGAGACCTCCGGTGACAAAGACAAGCCGTTCACCTGTCTTCTCTGTGACAAGAGCTTCTCCGTACGTCAAGCGCTGAGCCGGCATTTCCATGCATGCCATGGCATTGATCCGTCAGACGTGGACGTGTTTGGGTCGACATCCGACCCGCTCCACAAGCAGATGTTTGTTCCCTCTGCGGAGGACATGATGGAGATGGAGACTGGGATAGTGGGAGGGGGGGCAGAGGTGAACTCTGGCCAGGACGCCTCGGGAAAACAGTTCTTCTCCTGTGAGGTATGCATCAGAGAGTTCCATGACAGAGGCAGCTTGTGGCTGCACATGCTACATGCCCACCGTGACCAGGCTGGGTATGCCTGTGGGGTGTGTCTCAAGATCTGTGGCAACAATGACCACTTGGGTGCGCACTGGCGGCAGCATGTCGGAGGGGCTGACAATAGAAGATACGTGTGCACAGTGTGCGGCCGACAGCACGACACCCGCAAGAAGCTGGTTCACCATGTGGGCATTCACGCCCTGGAAAACGGGGAAGGGGGCTTTTTCGACCCTGAGAGTTTTGTTGTTCAGAACCAGGCGTTCTACACTTCAGAGCACAAAGACAAGGATGGAGGAGTTGCATCAGACTACGGTGCATCAAGCAGCTCGGACCATTGGGCCTTGGAGAGCCCCACTCAAACACAAGCTGATAACTACTCCTGTGAGATATGCTACAAGTCATTCCCCGCCGAGGAGGGTTTGGTGAAGCACAAGAGGAATGCCCACAAGGAGGAGCTCGCAGGGGGAGGAATGCTGCCTCGCGGCTCATATCAACTGTTCTTTGTGTGCGAGCTGTGCGGCTCTTCACATGGCTCTAAGTCGGAACGCTGGCGGCACGTGTATCAAACCCATTATGGTCAGGCCACCCTCACCTGCGACCGTCCTACCTGCGGGAAGGTGTTTACAACGCAGGCGCTTCGAACAGAACATTGTGCCTCACATCATCAGAAGCAGGGGGCTGTTCCAAACACTTGTGAAGTGTGCGGGAAGCTGTGGGGGTCCCGCGTTGACTTTTGGAAGCACATGATGGGGGTCCACCCGGACTTGGTGGCGCTCACCTGCGGGGTCTGCCTCAAGGTGCTGTGTGACTTGGCAGAGCTGAAGACACATGTCCGCGCTACACATTGGCCTCTTACGAACGAGTTCTCGTGTGATTTATGTGGTCGGCCTTACTCCAACAAGTCCAAGATGTCACGCCACCGGAAGATACACGGGGATGACTCTCAAGACCCTCGTATTTTGGAAAACACAAACTCCTCAAAGAAACTCTTGCCCTTGTCAGGCGCAAAGAATCCGGATCTGATGAAGAAGAGCATTTTGAAAATTCCTGATCCATCTGCGGTTGGATTGTCCTTGGACCCCAAGAGGCTCCTGCACCCCACCCTGTGGTGTGAGACTTGCCCTCATCTGCACTTTACAACTGTGGCGCAGCTGGGCCACCACCGGCGTACGGTACACAACCTGTATCCCTGCGACCTCTGCACTAAGTTTTACAGTCGCACCACACATCTGCTGTACCATGTAGTGAAGGCACACAGCAACCATCCTGAGCTCAGGTGCTCGATCTGCAGCAAGATGTGCCGCAGCAAGTCCGCTGTGGCCGCTCATATTGCTGCCAAACACTTCCCTCGGGAGGCAAAGAAGAAAAATCACCAGCCTAGCTTCAAGTCTGCAGTCATCAAGAAGCCCTCGACACAAACATGTTCACTTTGTTCCAAGACGTTCTGGAAGCGGTCAGTATATAGGAGACACTACAAAGCATGCCGCGCCAAGAATGTATCCAAACCTGCACCAGAGGCCTTGGCTTGCGAAATCTGCCCTGACATCATGCCGACCACCAAGACTGAACTCATGACGCACATCCGTGACCATCACGCGGGACATCCCAGCTTCTGTTGTCTGGTGGAGGGCTGTGGCCGGACGGTTCGCAGTCGGAGTGATCTGGAGCTGCACCAGAAGATGCACGATGCGGGAAAGCCCCACGCGACTTGTGACTTGTGTGGGAATGTGTACAACCACGAGTCTCGCGCTAGGAAGCACATGTTCCTTTATCATAAGCGCGCAGAGTTGGTGGGTCTCTGTGGCGTGTGCCTCAAAAACTTGCCTGACATGGAGCGCCTTAAGGAACACGTGGCTGCTGAACACCCGGGCAACTTGGAAGCGCCGTTCACATGCCAGGTGTGTGCCAAGACGCTCTCAAACAATTCCAAGGTGTGCCAGCATGTATTGACGTGCCACCCATCAGTTGTGGCGTGTCGGACGTGTCTGCAGGTGTTCCCCGACCGCTCAGAGCTGCAGACGCACAGGAAGGAGGTCCACGACTGCTACGATATAGATGAAATGGAAAAGAAACCAGAGGTGGCCCCACTTAAAGAAGGTGAGTCCCCACCCAAGCGTTCCAGACGCTCCTACGAGTGCGACTCTTGCGGAGAACAACTAACGTCCCCATCGCTGCTGAGTGACCACAAGAAACGGACACATAGTTTTCAGGTTAATGAAACAAAACCGTATCACTGTGTTGTCTGTGATAAGCACTTCTCTAATAAGACCAGTTACTGGAAGCACATCAACTCCCCGATACACCTCAACACCAAAATGATAAAATCAGCATCTTCAAACAGCGCCAGAGGCATCTCGCCTATAGACAACAAGATACCATTGGTGGTTTTACCTAATCTGGGTGACCTGGATCTAAAGCTAGAGGTGAGTCCTGCCAAGACCACTCGCCCCGAGTCTCAGAAGGTGTATGATAGCTCTGGCCCATGTTTCTGTTCTGTGTGTGGCAAACAGTGGCCTGCTAAGAGGCACCTTTGGCAGCACCTGATTCGCTATCACCAGCGGGAGGCGGCGGTCACCTGCGGCGTGTGCCTGGCGGTCTGTGCCGACTACCCTGATCTGTCCCGCCACCTGGCACAGCACCACTTGGCCCATCGCCCCAGAGAGGGGACCAACAACTTTGTGTGCCAGACTTGTGGGCGCTACCACAACGCCCGCACCAAACTCCAGCAGCACGCTACTGTACACGTGGTACTAGGCCCTGGGCCAGAAGGGCAACCTCCGTCCCTTGGGGAGCTCCGGGCTACCTGCGACACTTGTCTGGAAAGTTTCCCCGACATGGAGGCCCTGGGGCTCCACCAGCGCACGCAACACTCTGGTGACACGGACATCCTCACGCCTAAGATGGAGATGACAATGTTGTTTGACTGCGTGGAATGTGGGTTAGCTTTCAGCTCTGAGAGGGACTTGAACACTCATGAGGACACTCATAGAAGCCTCCAAGGATCCTTCAACTTtaatgacgatgatgatgatgatgatgatgaagcaTTCCCTTGTGGCAAGTGCGGAGAGGTGTTTGATGATTCGGATGCACTCATAGAGCACATCCAGGGTGCGCATGGCAAGGTCTTTGCGTGTCGACGCTGTGGGGACAAGTCCTTTTCGACATACCTCAACTTGACAAAGCACTATCGGGTGTGTAAGTCCAAGGGGGGGAGGAATCTGAAAGACAGTATTCATCGTTTGATGCTCAGACCCGCTGAAGATCCTTCAAACATGGCTCCCTTAGACGAGAACATGGAGTCGTTAATAAAGGAAGAGTTGATGGAAACGGACACAGGGAATGATCCTCTCGACGAAGTTCAGGACTCTCCTCTCTCGTCCTCCGGGATACAGATCAGGAGAGACTTCACTTGTTTGGTGGATGGAACGGGAACAAATACCTCGCCTTTACAGATGGAAAACTGTGAATCTCTTCCCAACGGAGTCTTGGGAGATTTGTCCGAAAACGAATTCGATAAATCCAAAGAAAATTCTATCACAAGACATGAACCGAATGAGGAACCTTTCCAGGACAAACCCGAGTTGGTCGGAAGAAGTACGGAAGATATTTCAAACGGAAGCTTGGATTCTTGCGGTCTTGTACCGGGTACATCGACCAAACTCCAGACTCTAGTTGAGGAGCAGATTGATGCCCTGAGGACAAATAAACTGGACCATGGAGGGAATTCTTGGGGTATTAACAATGAAGATTGTGCAGCGACAAACATGGATGAGCGACCCCCTCGCAGGAACCAACTATTGGCGGAAGCTACGAGTGATGAGTATTTGAACTCCTTGGACAATGCGTTGGATATATTAGAAGCGCAGAATGTGTGA
Protein Sequence: MSFDTESYMKLCRLCASYQAIKMEIYGKEGMGRNLVEKIEICLPFKVCEDDHLPKSLCYRCMYLLENFYDFRKNCVNSVSLLESCLTDPEGLEVNPELRLEYERLQSQLREVKGRNKKGDVGETDNSMPRLEPQVPVLSVVGRTGRRPSGEPAKRQTHSSAPVVDDSGDYHEEGGNWDVPPLKRSSKKPTSLLSCPYCTKAFYSQGRLSLHIKCHNGEEVPGAGANTAGKRPFSCDLCHRSYTLSKHLWGHMNSAHKGDPAVTCPVCGRVCSTCANLEEHKRSKHGLEDGEVVDSTYTDNAEAKEPLERAFKSESELRVKRQERAGSVKTQGGEVSLLKQTLLKSRKRAANQDGEEMDVEAAKKHAPEAAPSDSNPGNRRKSSKPRKIARYESGEEEEEYTCEVCFETFPSSEHLVEHGAVHCGYEEEASETSGDKDKPFTCLLCDKSFSVRQALSRHFHACHGIDPSDVDVFGSTSDPLHKQMFVPSAEDMMEMETGIVGGGAEVNSGQDASGKQFFSCEVCIREFHDRGSLWLHMLHAHRDQAGYACGVCLKICGNNDHLGAHWRQHVGGADNRRYVCTVCGRQHDTRKKLVHHVGIHALENGEGGFFDPESFVVQNQAFYTSEHKDKDGGVASDYGASSSSDHWALESPTQTQADNYSCEICYKSFPAEEGLVKHKRNAHKEELAGGGMLPRGSYQLFFVCELCGSSHGSKSERWRHVYQTHYGQATLTCDRPTCGKVFTTQALRTEHCASHHQKQGAVPNTCEVCGKLWGSRVDFWKHMMGVHPDLVALTCGVCLKVLCDLAELKTHVRATHWPLTNEFSCDLCGRPYSNKSKMSRHRKIHGDDSQDPRILENTNSSKKLLPLSGAKNPDLMKKSILKIPDPSAVGLSLDPKRLLHPTLWCETCPHLHFTTVAQLGHHRRTVHNLYPCDLCTKFYSRTTHLLYHVVKAHSNHPELRCSICSKMCRSKSAVAAHIAAKHFPREAKKKNHQPSFKSAVIKKPSTQTCSLCSKTFWKRSVYRRHYKACRAKNVSKPAPEALACEICPDIMPTTKTELMTHIRDHHAGHPSFCCLVEGCGRTVRSRSDLELHQKMHDAGKPHATCDLCGNVYNHESRARKHMFLYHKRAELVGLCGVCLKNLPDMERLKEHVAAEHPGNLEAPFTCQVCAKTLSNNSKVCQHVLTCHPSVVACRTCLQVFPDRSELQTHRKEVHDCYDIDEMEKKPEVAPLKEGESPPKRSRRSYECDSCGEQLTSPSLLSDHKKRTHSFQVNETKPYHCVVCDKHFSNKTSYWKHINSPIHLNTKMIKSASSNSARGISPIDNKIPLVVLPNLGDLDLKLEVSPAKTTRPESQKVYDSSGPCFCSVCGKQWPAKRHLWQHLIRYHQREAAVTCGVCLAVCADYPDLSRHLAQHHLAHRPREGTNNFVCQTCGRYHNARTKLQQHATVHVVLGPGPEGQPPSLGELRATCDTCLESFPDMEALGLHQRTQHSGDTDILTPKMEMTMLFDCVECGLAFSSERDLNTHEDTHRSLQGSFNFNDDDDDDDDEAFPCGKCGEVFDDSDALIEHIQGAHGKVFACRRCGDKSFSTYLNLTKHYRVCKSKGGRNLKDSIHRLMLRPAEDPSNMAPLDENMESLIKEELMETDTGNDPLDEVQDSPLSSSGIQIRRDFTCLVDGTGTNTSPLQMENCESLPNGVLGDLSENEFDKSKENSITRHEPNEEPFQDKPELVGRSTEDISNGSLDSCGLVPGTSTKLQTLVEEQIDALRTNKLDHGGNSWGINNEDCAATNMDERPPRRNQLLAEATSDEYLNSLDNALDILEAQNV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448853;
90% Identity: iTF_01450847;
80% Identity: -