Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000014.1:1807593-1817461[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.012 2.4 10.6 1.9 2 21 223 242 222 244 0.93

2 28 0.0017 0.33 13.3 3.0 1 23 262 285 262 285 0.97

3 28 0.00015 0.029 16.6 2.4 2 23 292 314 291 314 0.96

4 28 0.0015 0.28 13.5 0.2 1 23 429 451 429 451 0.95

5 28 0.019 3.8 9.9 4.3 1 23 469 492 469 492 0.90

6 28 0.13 24 7.4 1.0 1 23 547 570 547 570 0.95

7 28 0.051 9.9 8.6 0.6 1 23 576 598 576 598 0.97

8 28 0.72 1.4e+02 5.0 1.8 1 23 607 629 607 629 0.94

9 28 0.0022 0.42 12.9 0.1 1 23 689 712 689 712 0.97

10 28 0.25 48 6.5 2.1 2 20 761 781 760 785 0.83

11 28 0.8 1.6e+02 4.9 0.1 2 23 794 816 794 816 0.93

12 28 0.052 10 8.6 0.3 2 23 823 845 822 845 0.94

13 28 6.2e-05 0.012 17.8 1.4 1 23 852 874 852 874 0.98

14 28 0.015 3 10.3 1.8 1 23 959 982 959 982 0.94

15 28 0.017 3.2 10.2 0.5 2 23 989 1011 988 1011 0.89

16 28 0.83 1.6e+02 4.8 0.9 2 21 1037 1056 1036 1057 0.92

17 28 0.27 53 6.3 0.3 3 23 1073 1094 1071 1095 0.90

18 28 0.0002 0.04 16.2 0.5 1 23 1101 1125 1101 1125 0.97

19 28 0.44 85 5.7 1.3 2 23 1133 1155 1133 1155 0.93

20 28 0.13 26 7.3 4.4 1 23 1193 1216 1193 1216 0.97

21 28 0.0091 1.8 11.0 0.3 3 23 1222 1243 1221 1243 0.95

22 28 0.0047 0.91 11.9 0.3 1 23 1285 1308 1285 1308 0.97

23 28 0.00016 0.031 16.5 2.6 1 23 1318 1342 1318 1342 0.91

24 28 1.8 3.6e+02 3.7 2.2 2 23 1404 1426 1403 1426 0.93

25 28 1.3 2.4e+02 4.3 0.3 2 23 1433 1454 1432 1455 0.93

26 28 0.00078 0.15 14.3 0.1 1 23 1522 1544 1522 1544 0.96

27 28 0.00013 0.026 16.7 0.0 1 23 1563 1586 1563 1586 0.95

28 28 0.019 3.6 10.0 0.7 1 21 1590 1611 1590 1612 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.012	2.4	10.6	1.9	2	21	223	242	222	244	0.93
2	28	0.0017	0.33	13.3	3.0	1	23	262	285	262	285	0.97
3	28	0.00015	0.029	16.6	2.4	2	23	292	314	291	314	0.96
4	28	0.0015	0.28	13.5	0.2	1	23	429	451	429	451	0.95
5	28	0.019	3.8	9.9	4.3	1	23	469	492	469	492	0.90
6	28	0.13	24	7.4	1.0	1	23	547	570	547	570	0.95
7	28	0.051	9.9	8.6	0.6	1	23	576	598	576	598	0.97
8	28	0.72	1.4e+02	5.0	1.8	1	23	607	629	607	629	0.94
9	28	0.0022	0.42	12.9	0.1	1	23	689	712	689	712	0.97
10	28	0.25	48	6.5	2.1	2	20	761	781	760	785	0.83
11	28	0.8	1.6e+02	4.9	0.1	2	23	794	816	794	816	0.93
12	28	0.052	10	8.6	0.3	2	23	823	845	822	845	0.94
13	28	6.2e-05	0.012	17.8	1.4	1	23	852	874	852	874	0.98
14	28	0.015	3	10.3	1.8	1	23	959	982	959	982	0.94
15	28	0.017	3.2	10.2	0.5	2	23	989	1011	988	1011	0.89
16	28	0.83	1.6e+02	4.8	0.9	2	21	1037	1056	1036	1057	0.92
17	28	0.27	53	6.3	0.3	3	23	1073	1094	1071	1095	0.90
18	28	0.0002	0.04	16.2	0.5	1	23	1101	1125	1101	1125	0.97
19	28	0.44	85	5.7	1.3	2	23	1133	1155	1133	1155	0.93
20	28	0.13	26	7.3	4.4	1	23	1193	1216	1193	1216	0.97
21	28	0.0091	1.8	11.0	0.3	3	23	1222	1243	1221	1243	0.95
22	28	0.0047	0.91	11.9	0.3	1	23	1285	1308	1285	1308	0.97
23	28	0.00016	0.031	16.5	2.6	1	23	1318	1342	1318	1342	0.91
24	28	1.8	3.6e+02	3.7	2.2	2	23	1404	1426	1403	1426	0.93
25	28	1.3	2.4e+02	4.3	0.3	2	23	1433	1454	1432	1455	0.93
26	28	0.00078	0.15	14.3	0.1	1	23	1522	1544	1522	1544	0.96
27	28	0.00013	0.026	16.7	0.0	1	23	1563	1586	1563	1586	0.95
28	28	0.019	3.6	10.0	0.7	1	21	1590	1611	1590	1612	0.93

Sequence Information

Coding Sequence: ATGTCTTTCGATACGGAGAGTTACATGCAGCTCTGTCGTCTGTGTGCTTCTTATCAAGCCATCAAAATGGAAATCTACGGTAAAGAAGGAACGGGACGAAATTTGGTGGAGAAGATCGAGATCTGTCTTCCGTTCAAGGTCTGCGAAGATGACCATCTCCCCAAGTCACTCTGCTACCGCTGCATGTACCTCCTGGAGAACTTCTACGACTTCCGTAAAAACTGCGTCAACTCTGTGTCTCTGCTGGAGAGCTGTCTCACTGACCCGGAAGGGCTGGAAGTGGTACGTTTTGTCTCGGCTGGaacactctctctcttctcCTCCCACTCGCACACTTGCTGTCATCTGCTCCCCACAATCTGTGTTCTAGAATCCAGAACTGAGACTGGAGTACGAACGTCTCCAGAGTCAACTGCGGGAGGTGAAAGTCGCAACAAGAAAGGGGAAGTTGGCGAGACGGACAACTCCATGCCCCGATTGGAGCCACAGGTCCCTGTGCCGAGCGTGGTGGGCCGTACCGGGCGTCGGCCCTCTGGGGAACCCGCCAAGCGACAAACCCATTCCTCTTCGCCCGTCGTGGACGACTCTGGAGACTATCACGAGGAAGGCGGGAACTGGGACGTGCCCTCGCTCAAAAGAAGCTCTAAGAAGCCAACATCGCTACTGTCATGTCCCTACTGCACCAAGGCCTTCTACTCCCAAGGCCGACTCTCGCTCCACATAAAGTGCCACAATGGAGAAGAGGTGCCCGGCGCTGGGGCCAACACCGCGGGCAAGCGGCCCTTCTCATGCGACCTATGTCATCGCTCCTACACGCTCTCCAAGCACCTGTGGGGACACATGAACTCTGCTCACAAAGGAGACCCCGCTGTGACGTGTCCTGTGTGTGGTCGGGTCTGCTCCACTTGCGCCAACCTGGAGGAACACAAGCGTTCCAAACACGGTCTAGAGGATGGCGAGGTGGTGGACTCCACCTACACCGACAATGCCGAGTCCAAGGAGCCTCTGGAGCGCGCGTTCAAGTCTGAGTCGGAGTTGCGTGTCAAGCGGCAGGAGAGAGCCGGGAGCGGGAAGACTCAGGGGGGAGAGGTGAGCCTTCTCAAGCAGACACTGCTCAAGTCCCGTAAGCGAGCAGCAAATCAGGACGGAGAGGAGATGGACGTCGAGGCGGCGAAGAAGCATGCCCCTGAGGCAGCGCCTTCAGACAGCAACCCTGGGAACCGCCGCAAGAGCTCCAAGCCGAGGAAGATTGCCCGATGCGAGAGCGGGGAAGAGGAGGAGGAGTACACTTGCGAGGTCTGCTTCGAGACTTTCCCCAGCAGCGAACATCTCGTGGAACACGGAGCCGTCCATTGTGGCTACGAGGAAGAAGCGTCGGAGACCTCCGGTGACAAAGACAAGCCGTTCACCTGTCTTCTCTGTGACAAGAGCTTCTCCGTACGTCAAGCACTGAGCCGGCATTTCCATGCATGCCACGGCATTGATCCGTCAGACGTGGACGTGTTTGGGTCTACATCCGACCCGCTCCACAAGCAGATGTTTGTTCCGTCTGCGGAGGACATGATGGAGATGGAGACCGGGATAGTGGGAGGGGGGGCAGAGGTGAACTCCGGCCAGGACGCCTCGGGAAAACAGTTCTTCTCCTGTGAGGTATGCATCAGAGAGTTCCATGACAGAGGCAGCTTGTGGCTGCACATGCTACATGCCCACCGTGATCAGGCTGGGTATGCCTGTGGGGTGTGTCTCAAGATCTGTGGCAACAATGACCACTTGGGTGCGCACTGGCGGCAGCATGTCGGAGGGGCTGACAATAGACGATACGTGTGCACAGTGTGCGGCCGACAGCACGACACCCGCAAGAAGCTGGTTCACCATGTGGGCATTCACGCCCTGGAAAACGGGGAAGGGGGCTTTTTCGACCCTGAGAGTTTTGTTGTTCAGAACCAGGCATTCTACACTTCAGAGCACAAAGACAAGGATGGAGGCGTTGCATCAGACTACGGTGCATCAAGCAGCTCGGACCATTGGGCCTTGGAGAGCCCCACTCAAACACAAGCTGATAACTACTCCTGTGAGATTTGCTACAAATCATTCCCCGCCGAGGAGGGTTTGGTGAAGCACAAGAGGAATGCCCACAAGGAGGAGCTCGCAGGGGGAGGAATGCTGCCTCGTGGCTCATATCAACTGTTCTTTGTGTGCGAGCTGTGCGGCTCTTCACATGGCTCCAAGTCTGAACGCTGGCGGCACGTGTATCAAACCCACTATGGTCAGGCCACCCTCACCTGCGACCGTCCTACCTGCGGGAAGGTGTTTACAACGCAGGCGCTTAGAACAGAACATTGTGCCTCACATCATCAGAAGCAGGGAGCTGTTCCAAACACTTGTGAAGTGTGCGGGAAGCTGTGGGGGTCCCGCGTTGACTTTTGGAAGCACATGATGGGGGTCCACCCGGACTTGGTGGCACTCACCTGCGGGGTCTGCCTCAAGGTGCTGTGTGACTTGGCAGAGCTGAAGACACATGTCCGCGCTACACATTGGCCTCTTACGAACGAGTTCTCTTGTGATTTATGTGGTCGGCCTTACTCCAACAAGTCCAAGATGTCACGCCACCGGAAGATACACGGGGACGACTCCCAAGACCCTCGTATTTTGGAAAACACAAACTCCTCAAAGAAACTCTTGCCCTTGTCAGGCGCAAAGAATCCGGATCTGATGAAGAAGAGCATTTTGAAAATTCCTGATCCCTCTGCGGTTGGATTGTCCTTGGACCCCAAGAGGCTCCTGCACCCCACCCTGTGGTGTGAGACTTGCCCCCATCTCCACTTTACAACTGTGGCGCAGCTGGGCCACCACCGGCGTACGGTACACAACCTGTATCCCTGCGACCTCTGCACCAAGTTTTACAGTCGCACCACACATCTGCTGTACCATGTAGTGAAGGCACACAGCAACCATCCTGAGCTCAGGTGCTCGATCTGCAGCAAGATGTGCCGCAGCAAGTCCGCTGTGGCCGCTCATGTCGCTGCCAAACACTTCCCTCGGGAGGCAAAGAAGAAGAATCATCAGCCTAGCCTCAAGTCTGCAGTCATCAAGAAGCCCTCGACACAAACATGTTCACTTTGTTCCAAGACGTTCTGGAAGCGCTCGGTATATAGAAGGCACTACAAAGCATGCCGCGCCAAGAACGTATCCAAACCTGCACCCGAGGCCTTGGCTTGCGAAGTCTGCCCTGACATCACGCTGACCACCAAGACTGAACTCATGACGCACATCCGTGACCATCACGCGGGACATCCCAGCTTCTGTTGTCCGGTGGAAGGCTGTGGCCGGATGGTCCGCAGTCGGAGTGATCTGGAGCTGCACCAGAAGATGCACGATGCGGGAAAGCCCCACGCGACTTGCGACTTGTGTGGGAATGTGTACAACCATGAGTCTCGCGCTAGGAAGCACATGTTCCTCTATCACAAGCGCGCAGAGTTGGTGGGTCTCTGTGGGGTGTGCCTCAAAAACTTGCCTGACATGGAGCGCCTTAAGGAACACGTGGTTGCTGAACACCCGGGCAACTTGGAAGCGCCGTTCACATGCCAGGTATGTGCCAAGACGCTCTCTAACAATTCCAAGGTGTGCCAGCATGTATTGACGTGCCACCCGTCAGTTGTGGCGTGTCGGACGTGTCTGCAGGTGTTCCCCGACCGCTCAGAGCTGCAGACGCACAGGAAGGAGGTCCACGACTGCTACGATATGGTAAGAGAAGACCAAACTCCCGACAATGGTAGAGATGAAATGGAAAAGAAACAAGAGGTGGCCCCACTTAAAGAAGGTGAGTCCCCACCCAAGCGTTCCAGACGCTCCTACGAGTGCGACTCTTGCGGAGAACAACTAACGTCCCCATCGCTGCTGAGTGACCACAAGAAACGGACACACAGTTTTCAGGTTAATGAAACGAAACCGTATCACTGTGGTGTCTGTGATAAGCACTTCTCTAATAAGACCAGTTACTGGAAGCACATCAACTCCCCGATACACCTCAACACCAAAATGATAAAATCAGCATCTTCAAACAGCGCCAGAGGCATCTCGCCTATAGACAACAAAATACCACTGGTGGTTTTACCTAATCTGGGTGACCTGGATCTAAAGCTAGAGGCGAGCTCTGCCAAGACCACTCGCCCCGAGTCTCAGAAGGTGTATGATAGCTCTGGGCCGTGTTTCTGTTCTGTGTGCGGCAAGCAGTGGCCTGCTAAGAGGCACCTTTGGCAGCACCTGATTCGCTATCACCAGCGGGAGGCGGCGGTCACCTGCGGCGTGTGCCTGGCGGTCTGTGCCGACTACCCTGATCTGTCCCGCCACCTGGCACAGCACCACTTGGCCCATCGCCCCAGAGAGGGGACCAACAACTTTGTTTGCCAGACTTGTGGGCGCTACCACAACGCCCGCACCAAACTGCAGCAGCACGCTACTGTACACGTGTTTCCCGACATGGAGGCCCTGGGGCTCCACCAGCGCACGCAACACACTGATGACACGGACATCCTCACGCCTAAGATGGAGATGACAATGTTGTTTGACTGCGTGGAATGTGGGTTAGCTTTCAGCTCCGAGAGGGACTTGAACACTCATGAGGACACTCATAGAAGTCTCCAAGGATCCTTCAACTTTAATGacgaggatgatgatgatgaagcaTTCCCTTGTGGCAAGTGCGGAGAGGTGTTTGATGATTCGGATGCACTCATAGAGCACATCCAGGGTGCGCATGGCAAGGTCTTTGCGTGTCGACGCTGTGGGGACAAGTCCTTTTCGACATACCTCAACTTGACAAAACACTATCGGGTGTGTAAGTCCAAGGGGGGGAGGAATCTGAAGGACAGTATTCATCGTTTGATGCTCAGACCCGCTGAGGATCCTTCAAACATGGCTCCCTTAGACGAGAACATGGAGTCGTTAATAAAGGAAGAGTTGATGGAAACGGACACAGGGAACGATCCTCTCGACGAAGTTCAGGACTCTCCTCTCTCGTCCTCCGGGATACAGGTCAGGAGAGACTTCACTTGTTTGATGGATGGAACGGGAACAAATACCTCGCCTTTACAGATGGAAAACTGTGAATCTCTTCCCAACGGAGACTTGGGAGATTTGTCCGAAAACGAATTCGATAAATCAAAAGAAAATTCTATCACAAGACATGAACCGAATGAGGAACCTTTCCAGGGCAAACCTGGGTCGGTCGGAAGAAGTACGGAAGATATTTCAAACGGAAGCTTGGATTCTTGCGGTCTTGTACCGGGTGCGTCGACCAAACTCCAGACTCTAGTCGAGGAGCAGATTGATGCCCTGGGGACAAAGAAACTGGACCACGGAGGGAATTCTTGGGGTATTAACAACGAAGATTGTGCAGCGACAAATATCGATGAGCGACCCCCTTGCAGGAACCAATTATTGGCGGAAGCTACGAGTGACGAGTATTTGAACTCCTTGGACAATGCGTTGGATATATTAGAAGCGCAGAATGTGTGA
Protein Sequence: MSFDTESYMQLCRLCASYQAIKMEIYGKEGTGRNLVEKIEICLPFKVCEDDHLPKSLCYRCMYLLENFYDFRKNCVNSVSLLESCLTDPEGLEVVRFVSAGTLSLFSSHSHTCCHLLPTICVLESRTETGVRTSPESTAGGESRNKKGEVGETDNSMPRLEPQVPVPSVVGRTGRRPSGEPAKRQTHSSSPVVDDSGDYHEEGGNWDVPSLKRSSKKPTSLLSCPYCTKAFYSQGRLSLHIKCHNGEEVPGAGANTAGKRPFSCDLCHRSYTLSKHLWGHMNSAHKGDPAVTCPVCGRVCSTCANLEEHKRSKHGLEDGEVVDSTYTDNAESKEPLERAFKSESELRVKRQERAGSGKTQGGEVSLLKQTLLKSRKRAANQDGEEMDVEAAKKHAPEAAPSDSNPGNRRKSSKPRKIARCESGEEEEEYTCEVCFETFPSSEHLVEHGAVHCGYEEEASETSGDKDKPFTCLLCDKSFSVRQALSRHFHACHGIDPSDVDVFGSTSDPLHKQMFVPSAEDMMEMETGIVGGGAEVNSGQDASGKQFFSCEVCIREFHDRGSLWLHMLHAHRDQAGYACGVCLKICGNNDHLGAHWRQHVGGADNRRYVCTVCGRQHDTRKKLVHHVGIHALENGEGGFFDPESFVVQNQAFYTSEHKDKDGGVASDYGASSSSDHWALESPTQTQADNYSCEICYKSFPAEEGLVKHKRNAHKEELAGGGMLPRGSYQLFFVCELCGSSHGSKSERWRHVYQTHYGQATLTCDRPTCGKVFTTQALRTEHCASHHQKQGAVPNTCEVCGKLWGSRVDFWKHMMGVHPDLVALTCGVCLKVLCDLAELKTHVRATHWPLTNEFSCDLCGRPYSNKSKMSRHRKIHGDDSQDPRILENTNSSKKLLPLSGAKNPDLMKKSILKIPDPSAVGLSLDPKRLLHPTLWCETCPHLHFTTVAQLGHHRRTVHNLYPCDLCTKFYSRTTHLLYHVVKAHSNHPELRCSICSKMCRSKSAVAAHVAAKHFPREAKKKNHQPSLKSAVIKKPSTQTCSLCSKTFWKRSVYRRHYKACRAKNVSKPAPEALACEVCPDITLTTKTELMTHIRDHHAGHPSFCCPVEGCGRMVRSRSDLELHQKMHDAGKPHATCDLCGNVYNHESRARKHMFLYHKRAELVGLCGVCLKNLPDMERLKEHVVAEHPGNLEAPFTCQVCAKTLSNNSKVCQHVLTCHPSVVACRTCLQVFPDRSELQTHRKEVHDCYDMVREDQTPDNGRDEMEKKQEVAPLKEGESPPKRSRRSYECDSCGEQLTSPSLLSDHKKRTHSFQVNETKPYHCGVCDKHFSNKTSYWKHINSPIHLNTKMIKSASSNSARGISPIDNKIPLVVLPNLGDLDLKLEASSAKTTRPESQKVYDSSGPCFCSVCGKQWPAKRHLWQHLIRYHQREAAVTCGVCLAVCADYPDLSRHLAQHHLAHRPREGTNNFVCQTCGRYHNARTKLQQHATVHVFPDMEALGLHQRTQHTDDTDILTPKMEMTMLFDCVECGLAFSSERDLNTHEDTHRSLQGSFNFNDEDDDDEAFPCGKCGEVFDDSDALIEHIQGAHGKVFACRRCGDKSFSTYLNLTKHYRVCKSKGGRNLKDSIHRLMLRPAEDPSNMAPLDENMESLIKEELMETDTGNDPLDEVQDSPLSSSGIQVRRDFTCLMDGTGTNTSPLQMENCESLPNGDLGDLSENEFDKSKENSITRHEPNEEPFQGKPGSVGRSTEDISNGSLDSCGLVPGASTKLQTLVEEQIDALGTKKLDHGGNSWGINNEDCAATNIDERPPCRNQLLAEATSDEYLNSLDNALDILEAQNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448853;
90% Identity: iTF_01447794;
80% Identity: -