Tgen035444.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010003560.1:36631-46474[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.015 2.7 10.6 1.9 2 21 194 213 193 215 0.93 2 29 0.002 0.38 13.3 3.0 1 23 233 256 233 256 0.97 3 29 0.00018 0.033 16.6 2.4 2 23 263 285 262 285 0.96 4 29 0.0017 0.32 13.5 0.2 1 23 400 422 400 422 0.95 5 29 0.023 4.3 9.9 4.3 1 23 440 463 440 463 0.90 6 29 0.15 28 7.4 1.0 1 23 518 541 518 541 0.95 7 29 0.06 11 8.6 0.6 1 23 547 569 547 569 0.97 8 29 0.85 1.6e+02 5.0 1.8 1 23 578 600 578 600 0.94 9 29 0.0026 0.48 12.9 0.1 1 23 660 683 660 683 0.97 10 29 0.29 54 6.5 2.1 2 20 732 752 731 756 0.83 11 29 0.94 1.8e+02 4.9 0.1 2 23 765 787 765 787 0.93 12 29 0.061 11 8.6 0.3 2 23 794 816 793 816 0.94 13 29 7.3e-05 0.014 17.8 1.4 1 23 823 845 823 845 0.98 14 29 0.018 3.4 10.3 1.8 1 23 930 953 930 953 0.94 15 29 0.02 3.7 10.2 0.5 2 23 960 982 959 982 0.89 16 29 0.98 1.8e+02 4.8 0.9 2 21 1008 1027 1007 1028 0.92 17 29 5.9 1.1e+03 2.3 0.2 11 23 1053 1065 1043 1066 0.78 18 29 0.00024 0.045 16.2 0.5 1 23 1072 1096 1072 1096 0.97 19 29 0.51 96 5.7 1.3 2 23 1104 1126 1104 1126 0.93 20 29 0.16 29 7.3 4.4 1 23 1164 1187 1164 1187 0.97 21 29 0.011 2 11.0 0.3 3 23 1193 1214 1192 1214 0.95 22 29 0.0055 1 11.9 0.3 1 23 1256 1279 1256 1279 0.97 23 29 0.00019 0.035 16.5 2.6 1 23 1289 1313 1289 1313 0.91 24 29 2.2 4e+02 3.7 2.2 2 23 1375 1397 1374 1397 0.93 25 29 1.5 2.7e+02 4.3 0.3 2 23 1404 1425 1403 1426 0.93 26 29 0.056 10 8.7 0.1 2 23 1480 1502 1480 1502 0.97 27 29 0.00092 0.17 14.3 0.1 1 23 1519 1541 1519 1541 0.96 28 29 0.00016 0.029 16.7 0.0 1 23 1560 1583 1560 1583 0.95 29 29 0.022 4.1 10.0 0.7 1 21 1587 1608 1587 1609 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTCGATACGGAGAGTTACATGCAGCTCTGTCGTCTGTGTGCTTCTTATCAAGCCATCAAAATGGAAATCTACGGTAAAGAGGGAACGGGACGAAATTTGGTGGAGAAGATCGAGATCTGTCTTCCGTTCAAGGTCTGCGAAGATGACCATCTCCCCAAGTCACTCTGCTACCGCTGCATGTACCTCCTGGAGAACTTCTACGACTTCCGTAAAAACTGCGTCAACTCTGTGTCTCTGCTGGAGAGCTGTCTCACTGACCCGGAAGGGCTGGAAGTGAATCCAGAACTGAGACTGGAGTACGAACGTCTCCAGAGTCAACTGCGGGAGGCGAAAGGTTGCAACAAGAAAGGGGAAGTTGGCGAGACGGACAACTCCATGCCCCGATTGGAGCCACAGGTCCCTGTGCCGAGCGTGGTGGGCCGTACCGGGCGTCGGCCCTCTGGGGAACCCGCCAAGCGACAAATCCATTCCTCTGCGCCCGTCGTGGACGACTCTGGAGACTATCACAAGGAAGGCGGGAATTGGGACGTGCCCTCGCTCAAAAGAAGCTCTAAGAAGCCAACCTCGCTACTGTCATGTCCCTACTGCACCAAGGCCTTCTACTCCCAAGGCCGACTCTCGCTCCACATAAAGTGCCACAATGGAGAAGAGGTGCCCGGCGCTGGGGCCAACACGGCGGGCAAGCGGCCCTTCTCATGCGACCTATGTCATCGCTCCTACACGCTCTCCAAGCACCTGTGGGGACACATGAACTCTGCTCACAAAGGAGACCCCGCTGTGACGTGTCCTGTGTGTGGTCGGGTCTGCTCCACTTGCGCCAACCTGGAGGAACACAAGCGTTCCAAACACGGTCTAGAGGATGGCGAGGTGGTGGACTCCACCTACACCGACAATGCCGAGTCCAAGGAGCCTCTGGAGCGCGCGTTCAAGTCTGAGTCGGAGTTGCGTGTCAAGCGGCAGGAGAGAGCCGGGAGCGGGAAGACTCAGGGGAGAGAGGTGAGCCTTCTCAAGCAGACACTGCTCAAGTCTCGTAAGCGAGCAGCAAACCAGGACGGAGAGGAGATGGACGTCGAGGCGGCGAAGAAGCATGCCCCTGAGGCAGCGCCTTCAGACAGCAACCCTGGGAACCGCCGCAAGAGCTCCAAGCCGAGGAAGATTGCCCGATGCGAGAGCGGAGAAGAGGAGGAGGAGTACACTTGCGAGGTCTGCTTCGAGACTTTCCCCAGCAGCGAACATCTCGTGGAACACGGAGCCGTCCATTGTGGCTACGAGGAAGAAGCGTCAGAGACCTCCGGCGACAAAGACAAGCCGTTCACCTGTCTTCTCTGTGACAAGAGCTTCTCCGTACGTCAAGCGCTGAGCCGGCATTTCCATGCATGCCACGGCATTGATCCGTCAGACGTGGACGTGTTTGGGTCTACATCCGACCCTCTCCACAAGCAGATGTTTGTTCCGTCTGCGGAGGACATGATGGAGATGGAGACCGGGATAGTGGGAGGGGGGGCAGAGGTGAACTCCGGCCAGGACGCCTCGGGAAAACAGTTCTTCTCCTGTGAGGTATGCATCAGAGAGTTCCATGACAGAGGCAGCTTGTGGCTGCACATGCTACATGCCCACCGTGATCAGGCTGGGTATGCCTGTGGGGTGTGTCTCAAGATCTGTGGCAACAATGACCACTTGGGTGCGCACTGGCGGCAGCATGTCGGAGGGGCTGACAATAGACGATACGTGTGCACAGTGTGCGGCCGACAGCACGACACCCGCAAGAAGCTGGTTCACCATGTGGGCATTCACGCCCTGGAAAACGGGGAAGGGGGCTTTTTCGACCCTGAGAGTTTTGTTGTTCAGAACCAGGCATTCTACACTTCAGAGCACAAAGACAAGGATGGAGGCGTTGCATCAGACTATGGTGCATCAAGCAGCTCGGACCATTGGGCCTTGGAGAGCCCCACTCAAACACAAGCTGATAACTACTCCTGTGAGATATGCTACAAATCATTCCCCGCCGAGGAGGGTTTGGTGAAGCACAAGAGGAATGCCCACAAGGAGGAGCTCGCAGGGGGAGGAATGCTGCCTCGTGGCTCATATCAACTGTTCTTTGTGTGCGAGCTGTGCGGCTCTTCACATGGCTCCAAGTCTGAACGCTGGCGGCACGTGTATCAAACCCACTATGGTCAGGCCACCCTCACCTGCGACCGTCCTACCTGCGGGAAGGTGTTTACAACGCAGGCGCTTCGAACAGAACATTGTGCCTCACATCATCAGAAGCAGGGGGCTGTTCCCAACACTTGTGAAGTGTGCGGGAAGTTGTGGGGGTCCCGCGTTGACTTTTGGAAGCACATGATGGGGGTCCACCCGGACTTGGTGGCGCTCACCTGCGGGGTTTGCCTCAAGGTGCTGTGTGACTTGGCAGAGCTGAAGACACATGTCCGCGCTACACATTGGCCTCTTACGAACGAGTTCTCATGTGATTTATGTGGTCGGCCTTACTCCAACAAGTCCAAGATGTCACGCCACCGGAAGATACACGGGGACGACTCCCAAGACCCTCGTATTTTGGAAAACACAAACTCCTCAAAGAAACTCTTGCCCTTGTCAGGCGCAAAGAATCCGGATCTGATGAAGAAGAGCATTTTGAAAATTCCTGATCCCTCTGCGGTTGGATTGTCCTTGGACCCCAAGAGGCTCCTGCACCCCACCCTGTGGTGTGAGACTTGCCCTCATCTGCACTTTACAACTGTGGCGCAGCTGGGCCACCACCGGCGTACGGTACACAACCTGTATCCCTGCGACCTCTGCACCAAGTTTTACAGTCGCACCACACATCTGCTGTACCATGTAGTGAAGGCACACAGCAACCATCCTGAGCTCAGGTGCTCGATCTGCAGCAAGATGTGCCGCAGCAAGTCCGCTGTGGCCGCTCATGTCGCTGCCAAACACTTCCCTCGGGAGGCAAAGAAGAAGAATCATCAGCCTAGCCTCAAGTCTGCAGTCATCAAGAAGCCCTCGACACAAACATGTTCACTTTGTTCCAAGACGTTCTGGAAGCGCTCGGTATATAGGAGGCACTACAAAGCATGCCGCGCCAAGAACGTATCCAAACCTGCACCCGAGGCCTTGGCTTGCGAAGTCTGCCCTGACATCACGCCGACCACCAAGACTGAACTCATGACACACATCCGTGACCATCACGCGGGACATCCCAGCTTCTGTTGTCCGGTGGAAGGCTGTGGCCGGATGGTCCGCAGTCGGAGTGATCTGGAGCTGCACCAGAAGATGCATGATGCGGGAAAGCCCCACGCAACTTGCGACTTGTGTGGGAATGTGTACAACCATGAGTCTCGCGCTAGGAAGCACATGTTCCTCTATCACAAGCGCGCAGAGTTGGTGGGACTCTGTGGGGTGTGTCTCAAAAACTTGCCTGACATGGAGCGCCTTAAGGAACACGTGGCTGCTGAACACCCGGGCAACTTGGAAGCGCCGTTCACATGCCAGGTATGTGCCAAGACGCTCTCTAACAATTCCAAGGTGTGCCAGCATGTATTGACGTGCCACCCGTCAGTTGTGGCATGTCGGACGTGTCTGCAGGTGTTCCCCGACCGCTCAGAGCTGCAGACGCACAGGAAGGAGGTCCACGACTGCTACGATATGGTAAGAGAAGACCAAACTCCCGACAATGGTAGAGATGAAATGGAAAAGAAACAAGAGGTGGCCCCACTTAAAGAAGGTGAGTCCCCACCCAAGCGTTCCAGACGCTCCTACGAGTGCGACTCTTGCGGAGAACAACTAACGTCCCCATCGCTTCTGAGTGACCACAAGAAACGGACACATAGTTTTCAGGTTAATGAAACGAAACCGTATCACTGTGGTGTCTGTGATAAGCACTTCTCTAATAAGACCAGTTACTGGAAGCACATCAACTCCCCGATACACCTCAACACCAAAATGATAAAATCAGCATCTTCAAACAGCGCCAGAGGCATCTCGCCTCTAGACAACAAGATACCATTGGTGGTTTTACCTAATCTGGGTGACCTGGATCTAAAGCTAGAGGCGAGTTCTACCAAGACCACTCGCCCCGAGTCTCAGAAGGTGTATGATAGCTCTGGGCCGTGTTTCTGTTCTGTGTGCGGCAAGCAGTGGCCTGCTAAGAGGCACCTTTGGCAGCACCTGATTCGCTATCACCAGCGGGAGGCGGCGGTCACCTGCGGCGTGTGCCTGGCGGTCTGTGCCGACTACCCTGATCTGTCCCGCCACTTGGCACAGCACCACTTGGCCCATCGCCCCAGAGAGAGGACCAACAACTTTGTGTGCCAGACTTGTGGGCGCTACCACAACGCCCGCACCAAACTGCAGCAGCACGCTACTGTACATGTGGTACTAGGCCCTGGGCCAGAAGGGCAACCTCCGTCCCTTGGGGAGCTCCGGGCTACCTGCGACACTTGTCTGGAAAGTTTCCCCGACATGGAGGCCCTGGGGCTCCACCAGCGCACGCAACACACTGATGACACGGACATTCTCACGCCTAAGATGGAGATGACAATGTTGTTTGACTGCGTGGAATGTGGGTTAGCTTTCAGCTCTGAGAGGGACTTGAACACTCATGAGGACACTCATAGAAGCCTCCAAGAATCCTTCAACTTTaatgatgaggatgatgatgatgaagcaTTCCCTTGTGGCAAGTGCGGAGAGGTGTTTGATGATTCGGATGCACTCATAGAGCACATCCAGGGTGCGCATGGCAAGGTCTTTGCATGTCGACGCTGTGGGGACAAGTCCTTTTCGACATACCTCAACTTGACAAAACACTATCGGGTGTGTAAGTCCAAGGGGGGGAGGAATCTGAAGGACAGTATTCATCGTTTGATGCTCAGACCCGCTGAGGATCCTTCAAACATGGCTCCCTTAGACGAGAACATGGAGTCGTTAATAAAGGAAGAGTTGATGGAAACGGACACAGGGAACGATCCTCTCGACGAAGTTCAGGACTCTCCTCTCTCGTCCTCCGGGATACAGGTCAGGAGAGACTTCACTTGTTTGATGGATGGAACGGGAACAAATACCTCGCCTTTACAGACGGAAAACTGTGAATCTCTTCCCAACGGAGACTTGGGAGATTTGTCCGAAAACGAATTCGataaatcaaaagaaaattcTATCACAAAACATGAACCGAATGAGGAACCTTTCCAGGGCAAACCTGGGTCGGTTGGAAGAAGTACGGAAGATATTTCAAACGGAAGCTTGGATTCTTGCGGTCTTGTACCGGGTGCGTCGACCAAACTCCAGACTCTAATCGAGGAGCAGATTGATGCCCTGGGGACAAAGAAACTGGACCACGGAGGGAATTCTTGGGGTATTAACAACGAAGATTGTGCTGCGACAAACATGGATGAGCGACCCCCTTGCAGGAACCAATTATTGGCGGAAGCTACGAGTGACGAGTATTTGAACTCCTTGGACAATGCGTTGGATATATTAGAAGCACAGAATGTGTGA
- Protein Sequence
- MSFDTESYMQLCRLCASYQAIKMEIYGKEGTGRNLVEKIEICLPFKVCEDDHLPKSLCYRCMYLLENFYDFRKNCVNSVSLLESCLTDPEGLEVNPELRLEYERLQSQLREAKGCNKKGEVGETDNSMPRLEPQVPVPSVVGRTGRRPSGEPAKRQIHSSAPVVDDSGDYHKEGGNWDVPSLKRSSKKPTSLLSCPYCTKAFYSQGRLSLHIKCHNGEEVPGAGANTAGKRPFSCDLCHRSYTLSKHLWGHMNSAHKGDPAVTCPVCGRVCSTCANLEEHKRSKHGLEDGEVVDSTYTDNAESKEPLERAFKSESELRVKRQERAGSGKTQGREVSLLKQTLLKSRKRAANQDGEEMDVEAAKKHAPEAAPSDSNPGNRRKSSKPRKIARCESGEEEEEYTCEVCFETFPSSEHLVEHGAVHCGYEEEASETSGDKDKPFTCLLCDKSFSVRQALSRHFHACHGIDPSDVDVFGSTSDPLHKQMFVPSAEDMMEMETGIVGGGAEVNSGQDASGKQFFSCEVCIREFHDRGSLWLHMLHAHRDQAGYACGVCLKICGNNDHLGAHWRQHVGGADNRRYVCTVCGRQHDTRKKLVHHVGIHALENGEGGFFDPESFVVQNQAFYTSEHKDKDGGVASDYGASSSSDHWALESPTQTQADNYSCEICYKSFPAEEGLVKHKRNAHKEELAGGGMLPRGSYQLFFVCELCGSSHGSKSERWRHVYQTHYGQATLTCDRPTCGKVFTTQALRTEHCASHHQKQGAVPNTCEVCGKLWGSRVDFWKHMMGVHPDLVALTCGVCLKVLCDLAELKTHVRATHWPLTNEFSCDLCGRPYSNKSKMSRHRKIHGDDSQDPRILENTNSSKKLLPLSGAKNPDLMKKSILKIPDPSAVGLSLDPKRLLHPTLWCETCPHLHFTTVAQLGHHRRTVHNLYPCDLCTKFYSRTTHLLYHVVKAHSNHPELRCSICSKMCRSKSAVAAHVAAKHFPREAKKKNHQPSLKSAVIKKPSTQTCSLCSKTFWKRSVYRRHYKACRAKNVSKPAPEALACEVCPDITPTTKTELMTHIRDHHAGHPSFCCPVEGCGRMVRSRSDLELHQKMHDAGKPHATCDLCGNVYNHESRARKHMFLYHKRAELVGLCGVCLKNLPDMERLKEHVAAEHPGNLEAPFTCQVCAKTLSNNSKVCQHVLTCHPSVVACRTCLQVFPDRSELQTHRKEVHDCYDMVREDQTPDNGRDEMEKKQEVAPLKEGESPPKRSRRSYECDSCGEQLTSPSLLSDHKKRTHSFQVNETKPYHCGVCDKHFSNKTSYWKHINSPIHLNTKMIKSASSNSARGISPLDNKIPLVVLPNLGDLDLKLEASSTKTTRPESQKVYDSSGPCFCSVCGKQWPAKRHLWQHLIRYHQREAAVTCGVCLAVCADYPDLSRHLAQHHLAHRPRERTNNFVCQTCGRYHNARTKLQQHATVHVVLGPGPEGQPPSLGELRATCDTCLESFPDMEALGLHQRTQHTDDTDILTPKMEMTMLFDCVECGLAFSSERDLNTHEDTHRSLQESFNFNDEDDDDEAFPCGKCGEVFDDSDALIEHIQGAHGKVFACRRCGDKSFSTYLNLTKHYRVCKSKGGRNLKDSIHRLMLRPAEDPSNMAPLDENMESLIKEELMETDTGNDPLDEVQDSPLSSSGIQVRRDFTCLMDGTGTNTSPLQTENCESLPNGDLGDLSENEFDKSKENSITKHEPNEEPFQGKPGSVGRSTEDISNGSLDSCGLVPGASTKLQTLIEEQIDALGTKKLDHGGNSWGINNEDCAATNMDERPPCRNQLLAEATSDEYLNSLDNALDILEAQNV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448853;
- 90% Identity
- iTF_01449846;
- 80% Identity
- -