Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000777.1:17018-43268[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00061 0.14 14.9 4.1 1 23 179 201 179 201 0.97

2 11 1.9e-05 0.0042 19.6 1.5 1 23 207 229 207 229 0.98

3 11 0.0002 0.045 16.4 2.4 1 23 235 258 235 258 0.96

4 11 0.075 17 8.3 3.4 1 21 264 284 264 286 0.95

5 11 0.00019 0.042 16.5 1.9 1 23 292 314 292 314 0.99

6 11 2.1e-05 0.0048 19.4 1.2 1 23 320 342 320 342 0.98

7 11 0.00048 0.11 15.2 1.4 1 23 350 373 350 373 0.97

8 11 6.1e-05 0.014 18.0 2.1 2 23 380 401 379 401 0.96

9 11 0.00014 0.032 16.9 0.6 1 23 407 429 407 429 0.98

10 11 1.9e-06 0.00043 22.7 2.4 1 23 435 458 435 458 0.97

11 11 3e-08 6.7e-06 28.4 0.8 1 23 472 494 472 494 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00061	0.14	14.9	4.1	1	23	179	201	179	201	0.97
2	11	1.9e-05	0.0042	19.6	1.5	1	23	207	229	207	229	0.98
3	11	0.0002	0.045	16.4	2.4	1	23	235	258	235	258	0.96
4	11	0.075	17	8.3	3.4	1	21	264	284	264	286	0.95
5	11	0.00019	0.042	16.5	1.9	1	23	292	314	292	314	0.99
6	11	2.1e-05	0.0048	19.4	1.2	1	23	320	342	320	342	0.98
7	11	0.00048	0.11	15.2	1.4	1	23	350	373	350	373	0.97
8	11	6.1e-05	0.014	18.0	2.1	2	23	380	401	379	401	0.96
9	11	0.00014	0.032	16.9	0.6	1	23	407	429	407	429	0.98
10	11	1.9e-06	0.00043	22.7	2.4	1	23	435	458	435	458	0.97
11	11	3e-08	6.7e-06	28.4	0.8	1	23	472	494	472	494	0.97

Sequence Information

Coding Sequence: ATGGTTCGAGAAGTCCAGCAGGTTGTAACTTCAGACGAGAACGCTGAGGAAGGAACTTATTTCGTAGATCAATCGGGTCACTACTACTACCAGGCGAACGCTGACTCTCAGCCCGTCATGACGGTTGTGTCAGGCATAGCGGACCCCGGTGGGGACGTGTCAGACGGGACAGGAGAGGCCACCTTCATGGCTGTTCAGCCCCAGGATGCTCACGTGGAGGAGATCTCGGTCATGGACCAGGGCTCTGATGGCATGTCCAGCGGCACAGAGAGTAACCAAGTTATCCTCAACGCTGGTGATGCATACCAAGCGGTCACCATCGTACCGTCGGACTCTGGAGCCGGGGAGGTGAGCTACGTCCTCATTGTGCAACAGCCTGACGACAAGGATGACAAGGAGGATGACAACGACCTCACCGTGTACGACTTTGACGACGCAGAAGAGGGAGGCATCCAATTGGAATCTGGCGATGAAGACGACAAGACCaagattatcaaaatattgccAAAGAAATCTCAGACGGTGACCCAAGCCCACATGTGTAACTACTGCAATTACACGAGTCCGAAAAGGTACTTGTTGTCACGCCACATGAAGTCCCATTCGGAGGAGCGGCCCCACAAGTGCAGTGTGTGTGAGCGAGGGTTCAAGACACTCGCGTCGCTCCAGAACCACGTCAACACCCACACAGGCACTAAGCCCCACCGCTGCAAGTTTTGTGACAGCGCCTTCACTACATCTGGTGAGCTCGTTAGACATGTTCGGTACAAACACACTCACGAGAAGCCCCACAAATGCACGATTTGCGACTATGCCAGTGTGGAACTCAGCAAAATGAGGAACCATATGCGCTGCCATACGGGCGAACGCCCTTACCAGTGTCCACACTGCACGTATGCCAGTCCTGACACGTTTAAGCTGAAGCGTCACTTGCGCATCCATACTGGAGAGAAGCCATACGAGTGTGACATCTGCCATGCGCGCTTCACGCAGTCCAACAGCCTCAAGGCGCACAAACTTATCCACAGTGCAGGAGACAAGCCAGTGTTTCAATGTGAGCTGTGTCCGACCACGTGTGGCCGCAAGACGGACCTTCGCATACATGTCCAGAAACTGCACACCTCGGACAGACCTCTCAAGTGCAAGCGCTGCGGGAAGTCCTTCCCCGACCGCTACTCCTACAAGATCCACAATAAGTCGCACGAGGGAGAGAAATGTTTCAAGTGCGATCTCTGTCCTTATGCTTCCATATCACAGCGACACCTCGAGTCTCACATGTTGATCCATACGGACCAGAAGCCCTACCAGTGCGACCAATGCGACCAGTCATTCCGACAAAAGCAACTCTTGCGGAGACACCAGAACCTGTACCACAACCCCAACTACGTGCCCCCACCTCCCAGAGAGAAGACCCACGAGTGTCCCGAGTGTGGTCGAGCGTTCAGGCACAAAGGCAACCTCATCCGACATATGGCGGTGCACGACCCAGAGTCGTCCGCGCAAGAAAAAGCGCTGGCACTGAAGCTCGGCCGACAAAAAAAGATACAGATCATTGACGGTCAGCACGTAGAGGTTATGGCAGGCgaggatgatgatgaagatgacgAGGACACTGATGGAGAGATGATGGCGGTAGAGGGTCAAGACGGACAGCAATATGTGGTGCTGGAGGTCATACAGCTTCAGGATGGGGAAGGAGGTGAGCAGGCCGTCGCTGTGGTGGCTGGGGATAGCTCACACTCCATGGGACACCTGCAGGGTCTGGACAGTGACGAAGAGGAAGAAGAGGGGCTGATGGCAGGACATCACATGGCGACAGACCCTcttgatgacgatgatgatgaggTCATGCACACGCTCAGGGAAAGGAAACTGTCGAGGAAAGATGCGTTTGCCATCAGGAAGAAAATACAGACTGAGAAGGACATGCAGAACTGCTTCGGGTTTGACGTAAGTAGCGTCATCTAG
Protein Sequence: MVREVQQVVTSDENAEEGTYFVDQSGHYYYQANADSQPVMTVVSGIADPGGDVSDGTGEATFMAVQPQDAHVEEISVMDQGSDGMSSGTESNQVILNAGDAYQAVTIVPSDSGAGEVSYVLIVQQPDDKDDKEDDNDLTVYDFDDAEEGGIQLESGDEDDKTKIIKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSAGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDRPLKCKRCGKSFPDRYSYKIHNKSHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLRRHQNLYHNPNYVPPPPREKTHECPECGRAFRHKGNLIRHMAVHDPESSAQEKALALKLGRQKKIQIIDGQHVEVMAGEDDDEDDEDTDGEMMAVEGQDGQQYVVLEVIQLQDGEGGEQAVAVVAGDSSHSMGHLQGLDSDEEEEEGLMAGHHMATDPLDDDDDEVMHTLRERKLSRKDAFAIRKKIQTEKDMQNCFGFDVSSVI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995620;
90% Identity: iTF_01450850; iTF_01448839; iTF_01446868; iTF_01445887;
80% Identity: -