Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010000826.1:130287-156028[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00072 0.17 14.6 4.1 1 23 253 275 253 275 0.97

2 11 2.2e-05 0.0053 19.4 1.5 1 23 281 303 281 303 0.98

3 11 0.00022 0.053 16.3 2.3 1 23 309 332 309 332 0.96

4 11 0.021 5 10.0 4.8 1 21 338 358 338 360 0.95

5 11 0.00022 0.053 16.3 1.9 1 23 366 388 366 388 0.99

6 11 2.5e-05 0.006 19.2 1.2 1 23 394 416 394 416 0.98

7 11 0.00057 0.14 15.0 1.4 1 23 424 447 424 447 0.97

8 11 7.2e-05 0.017 17.8 2.1 2 23 454 475 453 475 0.96

9 11 0.00017 0.04 16.6 0.6 1 23 481 503 481 503 0.98

10 11 2.3e-06 0.00054 22.5 2.4 1 23 509 532 509 532 0.97

11 11 3.5e-08 8.4e-06 28.2 0.8 1 23 546 568 546 568 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00072	0.17	14.6	4.1	1	23	253	275	253	275	0.97
2	11	2.2e-05	0.0053	19.4	1.5	1	23	281	303	281	303	0.98
3	11	0.00022	0.053	16.3	2.3	1	23	309	332	309	332	0.96
4	11	0.021	5	10.0	4.8	1	21	338	358	338	360	0.95
5	11	0.00022	0.053	16.3	1.9	1	23	366	388	366	388	0.99
6	11	2.5e-05	0.006	19.2	1.2	1	23	394	416	394	416	0.98
7	11	0.00057	0.14	15.0	1.4	1	23	424	447	424	447	0.97
8	11	7.2e-05	0.017	17.8	2.1	2	23	454	475	453	475	0.96
9	11	0.00017	0.04	16.6	0.6	1	23	481	503	481	503	0.98
10	11	2.3e-06	0.00054	22.5	2.4	1	23	509	532	509	532	0.97
11	11	3.5e-08	8.4e-06	28.2	0.8	1	23	546	568	546	568	0.97

Sequence Information

Coding Sequence: ATGATCCCGGCATccgtagaacactcattggtccgGTATCATGTGAGGTGTGTACAGCAGAGCCTCTATGCGATTGGTCAAATTAGAGACCAAGAAGCTAGCGGCGAGCGGTCCATCAAGATGGAGGGCCAGGAGGAGTCTGGCACCGAAACCATCACAGAGATCCAGAACTATTTGGAGACCTTCAACAAGGAGATCCAAAGTGGGGATCAGACGGTCCAGCACGTCACAGAAGTCCAGCAAGTTGTAACTTCAGACGAGAATGCTGAGGAAGGAACATATTTTGTAGATCAATCAGGTCACTACTACTACCAGGCGAACGCTGACTCTCAGCCCGTCATGACGGTTGTGTCAGGCATAGCGGACCCTGGTGGGGACGTGTCAGACGGGACAGGAGAGGCCACCTTCATGGCTGTTCAGCCACAGGACGCTCACGTGGAGGAGATCTCGGTGATGGACCAGGGCTCAGATGGCATGTCCAGCGGCACAGAGAGTAACCAAGTTATCCTCAACGCTGGTGATGCATACCAAGCAGTCACTATCGTACCGTCGGACTCTGGAGCCGGGGAGGTGAGCTACGTGCTCATTGTGCAACAGCCTGATGACAAGGATGACAAGGAGGATGACAACGACCTCACCGTGTATGACTTTGACGACGCAGAAGAAGGAGGCATCCAATTGGAATCCGGTGATGAAGACGACAAGACCAAGATCATCAAAATATTGCCAAAGAAATCTCAGACAGTGACCCAAGCCCACATGTGTAACTACTGCAACTACACGAGTCCGAAAAGGTACTTGTTGTCACGCCACATGAAGTCCCATTCAGAGGAGCGGCCCCACAAGTGCAGCGTGTGTGAGCGGGGGTTCAAGACACTCGCGTCGCTCCAGAACCACGTCAACACCCACACAGGCACTAAGCCTCACCGCTGCAAGTTTTGTGACAGCGCCTTCACTACATCTGGTGAGCTGGTTAGGCATGTTCGGTACAGGCACACGCACGAGAAACCCCATAAATGTACAGAGTGTGAATACTCGAGCGTGGAATTGAGTAAATTGAAGCGCCACATGCGTTGCCACACGGGCGAGCGTCCGTATCAGTGTCCACACTGCACATACGCCAGCCCTGACACGTTTAAGCTGAAGCGTCACTTGCGCATCCATACGGGAGAGAAACCATACGAGTGTGACATCTGCCATGCTCGCTTCACACAGTCCAACAGCCTCAAGGCACACAAACTTATCCACAGTGCAGGAGACAAGCCAGTGTTTCAATGTGAGCTGTGTCCGACCACGTGTGGCCGCAAGACAGACCTTCGCATACATGTCCAGAAACTACATACCTCGGACAGACCTCTCAAGTGCAAGCGCTGCGGGAAGTCCTTCCCTGACCGCTACTCCTACAAGATCCACAATAAGTCGCACGAGGGAGAGAAATGTTTCAAGTGCGATCTCTGTCCTTATGCTTCCATATCACAGCGACACCTCGAGTCTCACATGTTGATCCATACGGACCAGAAGCCCTACCAGTGCGACCAATGCGACCAGTCATTCCGACAAAAGCAACTCTTGCGGAGACACCAGAACCTGTACCACAACCCCAACTACGTGCCCCCACCCCCCAGAGAGAAGACCCACGAGTGCCCCGAGTGTGGTCGAGCGTTCAGGCACAAAGGCAACCTCATCCGGCACATGGCGGTGCACGACCCAGAGTCGTCAGCGCAAGAGAAGGCGCTGGCACTGAAGCTCGGCCGACAAAAGAAGATACAGATCATTGACGGTCAGCACGTAGAAGTTATGGCAGGCGAGGATGATGACGAAGATGACGAGGACACTGATGGAGAGATGATGGCAGTAGAGGGTCAAGACGGACAGCAATATGTGGTGCTGGAGGTCATACAGCTTCAGGATGGGGAAGGAGGTGAGCAGGCCGTCGCCGTGGTGGCTGGGGATAGCTCACACTCCATGGGACACCTACAGGGTCTGGACAGTGACGAAGAGGAAGAAGAGGGGCTGATGGCAGGACATCACATGGCGACAGACCctcttgatgatgatgatgatgaggtcATGCACACTCTCAGGGAAAGGAAACTGTCGAGGAAAGATGCGTTTGCCATCAGGAAGAAAATACAGACTGAGAAGGACATGCAGAACTGCTTCGGGTTTGACGAAGATGGTGATGAGGTGGATGACGACGAAGCGGCAAAAACTACTATCCAATTTCTGGAGGCCATCAATCATTAA
Protein Sequence: MIPASVEHSLVRYHVRCVQQSLYAIGQIRDQEASGERSIKMEGQEESGTETITEIQNYLETFNKEIQSGDQTVQHVTEVQQVVTSDENAEEGTYFVDQSGHYYYQANADSQPVMTVVSGIADPGGDVSDGTGEATFMAVQPQDAHVEEISVMDQGSDGMSSGTESNQVILNAGDAYQAVTIVPSDSGAGEVSYVLIVQQPDDKDDKEDDNDLTVYDFDDAEEGGIQLESGDEDDKTKIIKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYRHTHEKPHKCTECEYSSVELSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSAGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDRPLKCKRCGKSFPDRYSYKIHNKSHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLRRHQNLYHNPNYVPPPPREKTHECPECGRAFRHKGNLIRHMAVHDPESSAQEKALALKLGRQKKIQIIDGQHVEVMAGEDDDEDDEDTDGEMMAVEGQDGQQYVVLEVIQLQDGEGGEQAVAVVAGDSSHSMGHLQGLDSDEEEEEGLMAGHHMATDPLDDDDDEVMHTLRERKLSRKDAFAIRKKIQTEKDMQNCFGFDEDGDEVDDDEAAKTTIQFLEAINH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449899;
90% Identity: iTF_01445040;
80% Identity: -