Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010004325.1:28386-50585[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00068 0.19 14.7 4.1 1 23 246 268 246 268 0.97

2 11 2.1e-05 0.0057 19.4 1.5 1 23 274 296 274 296 0.98

3 11 0.00021 0.057 16.3 2.3 1 23 302 325 302 325 0.96

4 11 0.02 5.4 10.1 4.8 1 21 331 351 331 353 0.95

5 11 0.00021 0.057 16.3 1.9 1 23 359 381 359 381 0.99

6 11 2.4e-05 0.0065 19.2 1.2 1 23 387 409 387 409 0.98

7 11 0.00054 0.15 15.0 1.4 1 23 417 440 417 440 0.97

8 11 6.8e-05 0.019 17.8 2.1 2 23 447 468 446 468 0.96

9 11 0.00016 0.043 16.7 0.6 1 23 474 496 474 496 0.98

10 11 2.1e-06 0.00058 22.5 2.4 1 23 502 525 502 525 0.97

11 11 3.3e-08 9.1e-06 28.2 0.8 1 23 539 561 539 561 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00068	0.19	14.7	4.1	1	23	246	268	246	268	0.97
2	11	2.1e-05	0.0057	19.4	1.5	1	23	274	296	274	296	0.98
3	11	0.00021	0.057	16.3	2.3	1	23	302	325	302	325	0.96
4	11	0.02	5.4	10.1	4.8	1	21	331	351	331	353	0.95
5	11	0.00021	0.057	16.3	1.9	1	23	359	381	359	381	0.99
6	11	2.4e-05	0.0065	19.2	1.2	1	23	387	409	387	409	0.98
7	11	0.00054	0.15	15.0	1.4	1	23	417	440	417	440	0.97
8	11	6.8e-05	0.019	17.8	2.1	2	23	447	468	446	468	0.96
9	11	0.00016	0.043	16.7	0.6	1	23	474	496	474	496	0.98
10	11	2.1e-06	0.00058	22.5	2.4	1	23	502	525	502	525	0.97
11	11	3.3e-08	9.1e-06	28.2	0.8	1	23	539	561	539	561	0.97

Sequence Information

Coding Sequence: ATGATCCCGGCATccgtagaacactcattggtccgATATCATGTGAGGTGTGTACAGCAGAGCCTCTATGCGATTGGTCAAATTAGAGACCAAGAAGCTAGCGGCGAGCGGTCCATCAAGATGGAGGGCCAGGAGGAGTCTGGCACCGAAACCATCACAGAGATCCAGAACTATTTAGAGACCTTCAACAAGGAGATCCAAAGTGGGGATCAGACGGTCCAGCACGTCACAGAAGTCCAGCAAGTTGTAACTTCAGACGAGAACGCTGAGGAAGGAACTTATTTCGTAGATCAATCAGGTCACTACTACTACCAGGCGAACGCTGACTCTCAGCCCGTTATGACGGTTGTGTCAGGCATAGCGGATCCCGGTGGGGACGTGTCAGACGGGACAGGAGAGACCACCTTCATGGCTGTTCAGCCACAGGACGCTCACTACCAGGGCTCAGATGGCATGTCCAGTGGCACAGAGAGTAACCAAGTTATCCTCAACGCTGGTGATGCATACCAAGCAGTCACTATCGTACCGTCGGACTCTGGAGCCGGGGAGGTGAGCTACGTGCTCATTGTGCAACAGCCTGATGACAAGGATGACAAGGAGGATGACAACGACCTCACCGTGTATGACTTTGACGACACGGAAGAAGGAGGCATCCAATTGGAATCCGGCGACGAAGACGACAAGACCAAGATCATCAAAATATTGCCAAAGAAATCTCAGACGGTGACCCAAGCCCACATGTGTAACTACTGCAACTACACGAGTCCGAAAAGGTACTTGTTGTCACGACACATGAAGTCCCATTCGGAGGAGCGGCCCCACAAGTGCAGCGTGTGTGAGCGGGGGTTCAAGACACTGGCGTCGCTCCAGAACCACGTCAACACCCACACAGGCACTAAGCCCCACCGCTGCAAGTTTTGTGACAGCGCCTTCACTACATCTGGTGAGCTGGTTAGGCATGTTCGGTACAGGCACACGCACGAGAAACCCCATAAATGTACAGAGTGTGAATACTCGAGCGTGGAATTGAGTAAATTGAAGCGCCACATGCGTTGCCACACGGGCGAGCGTCCGTATCAGTGTCCACACTGCACGTACGCCAGCCCTGACACGTTTAAGCTGAAGCGTCACTTGCGCATCCATACGGGAGAGAAACCATATGAGTGTGACATCTGCCATGCTCGCTTCACACAGTCCAACAGCCTCAAGGCACACAAACTTATCCACAGTGCAGGAGACAAGCCAGTGTTTCAATGTGAGCTGTGTCCGACCACGTGTGGCCGCAAGACAGACCTTCGCATACATGTCCAGAAACTGCATACCTCGGACAGACCTCTCAAGTGCAAGCGCTGCGGGAAGTCCTTCCCTGACCGCTACTCCTACAAGATCCACAATAAGTCGCACGAGGGAGAGAAATGTTTCAAGTGCGATCTCTGTCCTTATGCTTCCATATCTCAGCGACACCTCGAGTCTCACATGTTGATCCATACGGACCAGAAGCCCTACCAGTGCGACCAATGCGACCAGTCATTCCGACAAAAGCAACTGTTGCGGAGACACCAGAACCTGTACCACAACCCCAACTACGTGCCCCCACCTCCCAGAGAGAAGACCCACGAGTGCCCCGAGTGCGGTCGAGCGTTCAGGCACAAAGGCAACCTCATCCGGCACATGGCGGTGCACGACCCAGAGTCGTCAGCGCAAGAGAAGGCGCTGGCACTGAAGCTCGGCCGACAAAAGAAGATACAGATCATTGACGGTCAGCACGTAGAAGTTATGGCAGGCGAGGATGATGACGAAGATGACGAGGACACTGATGGAGAGATGATGGCGGTAGAGGGTCAAGACGGACAGCAATATGTGGTGCTGGAGGTCATACAGCTTCAGGATGGGGAAGGAGGTGAGCAGGCCGTCGCCGTGGTGGCCGGGGATAGCTCACACTCCATGGGACACCTACAGGGTCTGGACAGTGACGAAGAGGAAGAAGAGGGGCTGATGGCAGGACATCACATGGCGACAGACCCtcttgatgatgatgatgatgaggtcATGCACACTCTCAGGGAAAGGAAACTGTCGAGGAAAGATGCGTTTGCCATCAGGAAGAAAATACAGACTGAGAAGGACATGCAGAACTGCTTCGGGTTTGACGACGATGGTGATGAGGTGGATGACGACGAAGCAGCAAAAACTACTATCCAATTTCTGGAGGCCATCAATCATTAA
Protein Sequence: MIPASVEHSLVRYHVRCVQQSLYAIGQIRDQEASGERSIKMEGQEESGTETITEIQNYLETFNKEIQSGDQTVQHVTEVQQVVTSDENAEEGTYFVDQSGHYYYQANADSQPVMTVVSGIADPGGDVSDGTGETTFMAVQPQDAHYQGSDGMSSGTESNQVILNAGDAYQAVTIVPSDSGAGEVSYVLIVQQPDDKDDKEDDNDLTVYDFDDTEEGGIQLESGDEDDKTKIIKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYRHTHEKPHKCTECEYSSVELSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSAGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDRPLKCKRCGKSFPDRYSYKIHNKSHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLRRHQNLYHNPNYVPPPPREKTHECPECGRAFRHKGNLIRHMAVHDPESSAQEKALALKLGRQKKIQIIDGQHVEVMAGEDDDEDDEDTDGEMMAVEGQDGQQYVVLEVIQLQDGEGGEQAVAVVAGDSSHSMGHLQGLDSDEEEEEGLMAGHHMATDPLDDDDDEVMHTLRERKLSRKDAFAIRKKIQTEKDMQNCFGFDDDGDEVDDDEAAKTTIQFLEAINH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449899;
90% Identity: iTF_01445040;
80% Identity: -