Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010001917.1:46410-74092[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00059 0.12 14.9 4.1 1 23 130 152 130 152 0.97

2 11 1.8e-05 0.0038 19.7 1.5 1 23 158 180 158 180 0.98

3 11 0.0002 0.041 16.4 2.4 1 23 186 209 186 209 0.96

4 11 0.073 15 8.3 3.4 1 21 215 235 215 237 0.95

5 11 0.00018 0.038 16.5 1.9 1 23 243 265 243 265 0.99

6 11 2.1e-05 0.0043 19.5 1.2 1 23 271 293 271 293 0.98

7 11 0.00047 0.096 15.3 1.4 1 23 301 324 301 324 0.97

8 11 5.9e-05 0.012 18.1 2.1 2 23 331 352 330 352 0.96

9 11 0.00014 0.028 16.9 0.6 1 23 358 380 358 380 0.98

10 11 1.9e-06 0.00038 22.8 2.4 1 23 386 409 386 409 0.97

11 11 2.9e-08 6e-06 28.5 0.8 1 23 423 445 423 445 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00059	0.12	14.9	4.1	1	23	130	152	130	152	0.97
2	11	1.8e-05	0.0038	19.7	1.5	1	23	158	180	158	180	0.98
3	11	0.0002	0.041	16.4	2.4	1	23	186	209	186	209	0.96
4	11	0.073	15	8.3	3.4	1	21	215	235	215	237	0.95
5	11	0.00018	0.038	16.5	1.9	1	23	243	265	243	265	0.99
6	11	2.1e-05	0.0043	19.5	1.2	1	23	271	293	271	293	0.98
7	11	0.00047	0.096	15.3	1.4	1	23	301	324	301	324	0.97
8	11	5.9e-05	0.012	18.1	2.1	2	23	331	352	330	352	0.96
9	11	0.00014	0.028	16.9	0.6	1	23	358	380	358	380	0.98
10	11	1.9e-06	0.00038	22.8	2.4	1	23	386	409	386	409	0.97
11	11	2.9e-08	6e-06	28.5	0.8	1	23	423	445	423	445	0.97

Sequence Information

Coding Sequence: ATGACACTGGCGCATGCAGTGGCACTTGTCGAAGGTCCACAAACATCTGACGTGTGGAACGGTAGGACAGCGAGCGTGCACAAACATTCAACGCGCAGAACGGGCATGTCCAGCGGCACAGAGAGTAACCAAGTTATCCTCAACGCTGGTGATGCATACCAAGCGGTCACTATCGTACCGTCGGACTCTGGAGCCGGGGAGGTGAGCTACGTGCTCATTGTGCAACAGCCTGACGACAAGGATGACAAGGAGGATGACAACGACCTCACTGTGTATGACTTTGATGACGCAGAAGAAGGAGGCATCCAATTGGAATCCGGTGATGAAGACGACAAGACCAAGATCATCAAAATATTGCCAAAGAAATCTCAGACAGTGACCCAAGCCCACATGTGTAACTACTGCAACTACACGAGTCCGAAAAGGTACTTGTTGTCACGCCACATGAAGTCCCATTCGGAGGAGCGGCCCCACAAGTGCAGCGTGTGTGAGCGGGGTTTCAAGACACTCGCGTCGCTCCAGAACCACGTCAACACCCACACAGGCACTAAGCCCCACCGCTGCAAGTTTTGTGACAGCGCCTTCACTACATCTGGTGAGCTCGTTAGACATGTTCGGTACAAACACACTCACGAGAAGCCCCACAAATGCACGATTTGCGACTATGCCAGTGTGGAACTCAGCAAAATGAGGAACCATATGCGCTGCCATACGGGCGAACGCCCTTACCAGTGTCCACACTGCACGTACGCCAGCCCTGACACATTTAAGCTGAAACGTCACTTGCGCATCCATACGGGAGAGAAACCATATGAGTGTGACATCTGCCACGCTCGCTTCACGCAGTCCAACAGCCTCAAGGCACACAAACTTATCCACAGTGCAGGAGACAAGCCAGTGTTTCAATGTGAACTGTGTCCGACCACGTGTGGCCGCAAGACAGACCTTCGCATACATGTCCAGAAACTGCATACCTCGGACAGACCTCTCAAGTGCAAGCGCTGCGGGAAGTCTTTCCCCGACCGCTACTCCTACAAGATCCACAATAAGTCGCACGAGGGAGAGAAATGTTTCAAGTGCGATCTCTGTCCTTATGCTTCCATATCACAGCGACACCTCGAGTCTCACATGTTGATCCATACGGACCAGAAGCCCTACCAGTGTGACCAATGCGACCAGTCATTCCGACAAAAGCAACTCTTGCGGAGACACCAGAACCTGTACCACAACCCCAACTACGTGCCCCCACCTCCCAGAGAGAAGACCCATGAGTGCCCCGAGTGTGGTCGAGCGTTCAGGCACAAAGGCAACCTCATCCGGCACATGGCGGTGCACGACCCAGAGTCATCAGCGCAAGAGAAGGCGCTGGCACTGAAGCTCGGCCGACAAAAGAAGATACAGATCATTGACGGTCAGCACGTAGAAGTTATGGCAGGCGAGGATGATGACGAAGATGACGAGGACACTGATGGAGAGATGATGGCGGTAGAGGGTCAAGACGGACAGCAATATGTGGTGCTGGAGGTCATACAGCTTCAGGATGGGGAAGGAGGTGAGCAGGCCGTCGCCGTGGTGGCTGGGGATAGTTCACACTCCATGGGACACCTGCAGGGTCTGGACAGTGACGAAGAGGAAGAAGAGGGGCTGATGGCAGGACATCACATGGCGACAGACCCtcttgatgatgatgatgatgatgatgatgaggtcATGCACACTCTCAGGGAAAGGAAACTGTCGAGAAAAGATGCGTTTGCCATCAGGAAGAAAATACAGACTGAGAAGGACATGCAGAACTGCTTCGGGTTTGACGACGATGGTGATGAGGTGGATGACGACGAAGCGGCAAAAACTACTATCCAATTTCTGGAGGCCATCAATCATTAA
Protein Sequence: MTLAHAVALVEGPQTSDVWNGRTASVHKHSTRRTGMSSGTESNQVILNAGDAYQAVTIVPSDSGAGEVSYVLIVQQPDDKDDKEDDNDLTVYDFDDAEEGGIQLESGDEDDKTKIIKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSAGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDRPLKCKRCGKSFPDRYSYKIHNKSHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLRRHQNLYHNPNYVPPPPREKTHECPECGRAFRHKGNLIRHMAVHDPESSAQEKALALKLGRQKKIQIIDGQHVEVMAGEDDDEDDEDTDGEMMAVEGQDGQQYVVLEVIQLQDGEGGEQAVAVVAGDSSHSMGHLQGLDSDEEEEEGLMAGHHMATDPLDDDDDDDDEVMHTLRERKLSRKDAFAIRKKIQTEKDMQNCFGFDDDGDEVDDDEAAKTTIQFLEAINH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995620;
90% Identity: iTF_01445040;
80% Identity: -