Tbar040461.2
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- lrrfip2
- Assembly
- GCA_902151455.1
- Location
- CABFWB010005096.1:4668-29794[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.87 3.8e+04 -4.2 0.1 62 83 370 391 348 395 0.71 2 3 2.9e-113 1.2e-108 365.2 29.0 1 300 618 924 618 924 0.91 3 3 0.00067 29 6.0 3.9 120 173 922 975 921 980 0.95
Sequence Information
- Coding Sequence
- ATGACCGTCGTGACTTCACCGAGGGACGAACCCAGGAGAGCACCCTTTAAGTCTACGTGTCTTATCCTCGTGGGTGCTAAAAGTCTGTCTGTGACATCATCGTTTGTCCTCAAGTATGACTGGACCTCGGTGTACGACCTTGAAAGAGGTACAGTTCGCCTTACAATAAAAACCACACCCGCCCGCTCCGCCAGTTTGCGAGTCCCCAGTCACGAGGGACACGCCCCGTTCCAGGCAGAATTCCGGCGGGTGTTGTTTTCACCGCGGTATCCCCTGGAATGCGCCGTTGACGGACGGTTACTCTCTCGAGTCCGGTTCCTCGGTATCCGTGCGTGTCTTTTGACAAGTTCCAGTTTGGTGAGAGATGCCGACGAATGTTGCTTCTACGACGCCGTCAGTGAGATACCCCTGAGCAAGCCGAGGATGGGCAACACCGCCGGTGCGGAGGGCACCAAAGGGGGCGGACGCCCAGGTCTCACCGACGAGTTCCCCATAGTTCCGGTGATTGACCCGCGACAAGAAGACAGTGAAGAAGACGACACCTCGAGTAGTAATCCCGAGATTAGCTCGCGTTTTTCAGATAAATCCGCTCCAATTGATAGCGATAAGGAAAGTTCGACGTCGCTCAGTGATAAATCAGATCTGGATGAAAGAGACGGTTCGGGCAGACTGTCGATGGCGGTTTCTTCGAGAGACCCGCGCTGTGTAGAGGCGTCCGTCGGCGCCGACAGTTCCGGTGAAGAGGACGCCGGTGTCGCGACCTTTGACGACGAGGGCTCGCTCAGGGTGGATCATGCTGCAACGAGGGGGGGTGACCTGGGTGTGAATCTGCCGGACACATTCGGGGAGAGTACGACTGAAGACTGTGAGGTCCAGAGTGTAGATGACTCCGTAGTCGAGGAAAAGATTGTACGCAACCTTCGTAAGGATGTGCTGGCCACGCCCCCCAAGGATGAGGAGCCTGACAGTGAAGTCTCAGACGTAAGTTCCTCGGCCCTTGGAAACATCCCGCAGTCAAGTCCTGGCTGTGACAAGTCCTCTGTATCCACTGAGGAAGGTGTTGTAGTGTCCAAATACATCGTGAAAACCGTTGAGGACACTCTTTTGGCCGCTGAAAGTGGATGTGATAGGGCTGACTCCCAGGATAGTAGGAAGTGTCTTGATGAGGCACCCTCTGAAGAAAGTGCTAACCAAGTTGTAGGGTCTGATCCCACAGGAAGTTCTGTGATTGACAATAGTGCTGCAGGAAGTGGATCTAATAAGAAGGTGGACATTGGAAATTATATCACTGACATCAGCAAAGAGGAAGAGAGGTTAGTTTCTAAAGTAGAGGATGAAAAGGGAGAAGATATTGATATAATTCCAAAGAACAAGGATATAGTTGGTGAATTAGGGGATGTAAAGGAGGAAGATGGGAAGAAAAATGATGTGGTCAATGAATTAGGGGATGAAAAGGTGGAAGATGGGAAGAAAAACGATGTGGTCGGTGAATTAGGGGATGTAAAGGTGGAAGATGGGAAGAAAAACGATGTGGTCGGTGAATTAGGGGCTGCTAATTATGATAACAGGGGTGTCAAAAGAGTAGAAAATGTGCCAGGTCAGTTTTGGGAGGAAAGCAAGAATGGGAATGAAGACACCGCTGACATCAATGGAATGAAAGAGGATGCAGTTGATAAAGCTGTGAATAGAAACGATGGTGATAATAGTACAGAAGATAGTGATGGTTATGATCTTGAAAACGATGAAGATATCAATAACAAACACAGAAGTAAAGGGAATATGGTCGATGAAACAGAGAACGAAGAGGATGCCGAGTACCTGAATAATTTTCTCGGGAAAAGCAATGACCAAGCAGAGGCCCGCCTTGCAGCGAGGAGGCAGGCGAGGGCAGAGGCCCGGGAGATACGCATGCGGGAACTTGAGAGGCAACAGAAGGAAATTGAGGAGAACACCAACAAGAGTTATGACTCCTTCACCGCAGAGCCGGGAAATAGGACGCCCCGTGTAGCCGCCTCCGTGAACCGCAGCAGCTCGCTGCTCTCTGGTGGGGGTAACAACAGTTACCACTCGAGTCGGCGCAGCTCGGAGGACTCGCTGGAGGAAGGGATCAGCCTCAGGGATGTCCGGCACGAGTTAAAGGAGGTGGAAGATAAGTTCCGAAAGGCGATGATACAGAATGCCCAGTTGGATAACGAGAAGGCATCCCTCACCTACCAGGTGGAACTCCTTAAGGACAGGCTGGAAGATCTGGAGGAGTCCCACTCGCAGTTGCAGCGTGAGAACCGGGACAAGTGTCGAGAACACGATCAGCTCAAGAGAGCGTCCGCCAAGTTGAAGGAAGACATGGAGTGGTACAAGGCGCAGTTGGAAGAGAGGGACAGACTCATTCAGGAGAAGGGCCTTATAATCGTGGGTGACGACCAGCTTTCCAGCGAGGACGAAAGTGTGGGTGAGGACTCACCCAAGAAACCTCCCAAGAGGGCTCTGGTCTCCATCGAGTCGGCGGAGATGTTGGAAACTGCAGGGGAAGGCTCTTTAGACGTACGGCTGAGGAGGTTTGCGGAGGAGCGCAACGAACTGCTGGACCAAGTGAGGCACCTCAAACTTGAATTGGAAGAGGAGCGCAGCAGACACAAGTCCGACGCCAAGAGGATACCTGGGGCCAACCTCAACGGCCCTGACACAGATTTTGAGGACATTCAGAGGGAGGCCAACAAGCTTCTAGGGGACTACAAGTTCAAGCTGCAGAAAGCGGAGCAGGATGTGTCTACACTGCAGGCCAATGTGGTGCGTCTTGAGAGCCAGGTGATCAGGTACAAGTCCGCCTCGGAGTCCTCGGAGAAGGGCGAGGATGAACTTAAGGTTGAAAAGAGGAAACTTCAGAGAGAGGTGCGAGAGTTGACGCAGCAACTGAGTCAGGCCGAGGCGGCTAAGGCTGCCTTGACTCATCAGTTCGACCAGCTTATGCTCGCCAAGAGATAA
- Protein Sequence
- MTVVTSPRDEPRRAPFKSTCLILVGAKSLSVTSSFVLKYDWTSVYDLERGTVRLTIKTTPARSASLRVPSHEGHAPFQAEFRRVLFSPRYPLECAVDGRLLSRVRFLGIRACLLTSSSLVRDADECCFYDAVSEIPLSKPRMGNTAGAEGTKGGGRPGLTDEFPIVPVIDPRQEDSEEDDTSSSNPEISSRFSDKSAPIDSDKESSTSLSDKSDLDERDGSGRLSMAVSSRDPRCVEASVGADSSGEEDAGVATFDDEGSLRVDHAATRGGDLGVNLPDTFGESTTEDCEVQSVDDSVVEEKIVRNLRKDVLATPPKDEEPDSEVSDVSSSALGNIPQSSPGCDKSSVSTEEGVVVSKYIVKTVEDTLLAAESGCDRADSQDSRKCLDEAPSEESANQVVGSDPTGSSVIDNSAAGSGSNKKVDIGNYITDISKEEERLVSKVEDEKGEDIDIIPKNKDIVGELGDVKEEDGKKNDVVNELGDEKVEDGKKNDVVGELGDVKVEDGKKNDVVGELGAANYDNRGVKRVENVPGQFWEESKNGNEDTADINGMKEDAVDKAVNRNDGDNSTEDSDGYDLENDEDINNKHRSKGNMVDETENEEDAEYLNNFLGKSNDQAEARLAARRQARAEAREIRMRELERQQKEIEENTNKSYDSFTAEPGNRTPRVAASVNRSSSLLSGGGNNSYHSSRRSSEDSLEEGISLRDVRHELKEVEDKFRKAMIQNAQLDNEKASLTYQVELLKDRLEDLEESHSQLQRENRDKCREHDQLKRASAKLKEDMEWYKAQLEERDRLIQEKGLIIVGDDQLSSEDESVGEDSPKKPPKRALVSIESAEMLETAGEGSLDVRLRRFAEERNELLDQVRHLKLELEEERSRHKSDAKRIPGANLNGPDTDFEDIQREANKLLGDYKFKLQKAEQDVSTLQANVVRLESQVIRYKSASESSEKGEDELKVEKRKLQREVRELTQQLSQAEAAKAALTHQFDQLMLAKR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450597; iTF_01445673; iTF_01446609; iTF_01448571;
- 90% Identity
- -
- 80% Identity
- -