Tmon015202.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000488.1:332412-357832[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-113 1.4e-108 364.9 28.3 1 300 558 864 558 864 0.90 2 2 0.00032 26 6.1 3.9 120 173 862 915 861 920 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATGCCGACGAATGTTGCTTCTACGACGCCGTCAGTGAGATACCCCTGAGCAAGCCGAGGATGGGCAACACCGCCGGTGTGGAGGGCACCAAAGGGGGCGGACGCCCAGGCCTCGCCGACGAGTTCCCCATAGTTCCGGTGATTGACCTGCGACAAGACGACAGTGACGACACCTCAAGTAATCCCGAGATTAGCTCGCGTTTCTCAGATAAATCCGCTCCAATCGATAGCGATAAGGAAAGTTCGACGTCGCTCAATGATCAATCAGATCTGGACGAAAGAGACGATTCGGGCAGACCGTCGATGGCGGTTTCTCAGAGAGACCCGCGCTGTACAGAGGCGTCCGTGGGCGCCGACATTTCGGGTGAAGAGGACGCCGGTGTCGCGACCTTTGACGACGAGGGCTCGCTCAGGGTGGATCGTGTTGTGGCGAGGGGGGGCGACCTGGGTGTGAATCTGCCGGACACTTTTGGAGAGAGTACGACTGAAGACTGTGAGGTCCAGAGTGTAGATGACCCCGTAGTCAAGGAAAAGATTGTACGCACCCTTTGTAAGGATGTGCTGACCACGCCCCCCAAGGATGAGGAGCCTGTTGGTGACGTTTCGGACGTGAGCTCCTCGGCCCTTGGAGACATCCCGCGGTCAAGTCCTGACAGTGACAAGGCCTCTGTATCCACCGAGGAAGATACTTTAGTGTCCAAAGACAAGGGGAAAACCGTTGAGGACACTCTGTTGGCCGCTGAAAGTTGTTGTGATGGGGCTGATTCCCAGGATAGTAGGAAGTGTCTTGATGAGGCACCCTCTGAAGAAAGTGCTAACCAAGTTGGAAGTTCTGCGATTGAAAATAGTGCTTCAGGAAGTGGATCTAGTAAGAAGGTGGACATTGGAAATGATATCACTGACATCAGCAAAGAGGAAGAGGGGTTAGTTTCTAAAGTAGAGGATGAAAAGGGAAAAGATATTGATAAGATTCCAAAGAACAGGGATATTGTTGGTGAATTAGGGGATGTAAAGGAGGAAGATGAGAAGAAAAATGATATTGTTTGTGAATTTGGGGGTGTAAAGGAGGAAGATGAGAAGAAAAATGATATTGTTGATGAATTTGGGGGTGTAAAGGAGGAAGAtgagaagaaaaattatattgttggtGAATTTGTGGGTGTAAAGGAGGAAGATAAGAAAAATGATATTGTTGGTGAATTTGAGGGTGTAAAGGAGGAAGATGAGAAGAAAAATGATATTGTTGATGAATTTGGGGGTGTAAAGGAGGAAGAtgagaagaaaaattatattgttggtGGATCAGGGGATGCAAAGGAGAAAGATGGGAGGAAAAATGATGTAGTTGGTGAATCAGGGTCTGGTAATGATGATAACAAGGGTGTCAAAAGAGTAGAAAATTTGCCAGGTTATATATTTTGGGAGGAAAGCAAGAAAGGGAAAGAAGACACCGCTGACATCAATGGAATGAAAGAGAATGCAATTGATAAAGCTGTGGATAGAAATGATGGTGATTATACTACCGAAGATAGTGATGGCTATGATCTTGACGACGATGAAGATATCAATAACAAATACAGAAGTAAAGGGAATGTGGTCGATGAAACAGAGAATGAAGAAGATGCCGACTGCCTGAATAATTTTCTCGGGAAAAGCAATGACCAAGCAGAGGCCCGCCTTGCAGCGAGGAGGCAGGCGAGGGCAGAGGCCCGGGAGATACGCATGCGGGAACTCGAGAGGCAACAGAAGGAAATTGAGGAGAACACCAACAAGAGTTATGACTCCTTCACCGCAGAGCCGGGGAATAGGACGCCCCGTGTGGCCGCCTCCGTGAACCGCAGCAGCTCGCTGCTCTCTGGTGGAGGTAACAACAGTTACCACTCGAGTCGGCGCAGCTCGGAGGACTCGTTGGAGGAAGGGATCAGCCTCAGAGATGTCCGGCACGAGTTAAAGGAGGTGGAAGATAAGTTTCGAAAGGCGATGATACAGAATGCCCAGTTGGATAACGAGAAGGCATCCCTCACCTACCAGGTGGAACTCCTTAAGGACAGGCTGGAAGACCTGGAGGAGTCCCACTCGCAGTTGCAGCGTGAGCACCGCGACAAATGTCGAGAACACGATCAGCTCAAGAGAGCGTCCGCCAAGTTGAAGGAAGACATGGAGTGGTACAAGGCGCAGTTGGAAGAGAGGGACAGACTCATTCAGGAGAAGGGCCTTATAATCGTGGGTGACGACCAGCTTTCCAGCGAGGACGAAAGTGTGGGTGATGACTCGCCCAAGAAACCTCCCAAGAGGGCTCTGGTCTCCATCGAGTCAGCGGAGATGTTGGAAACTGCAGGAGAGGGCTCTTTAGACGTACGGCTGAGGAGGTTTGCGGAGGAGCGCAACGAACTGCTGGACCAAGTGAGGCACCTCAAACTTGAATTGGAAGAGGAGCGCAGCAGACACAAGTCCGACGCCAAGAGGATACCTGGGGCCAGCCTCAACGGCCCTGACACAGATTTTGAGGACATTCAGAGAGAGGCCAACAAGCTTCTAGGGGACTACAAGTTCAAGCTACAAAAAGCGGAGCAGGATGTGTCTACACTGCAGGCCAATGTGGTGCGTCTTGAAAGCCAGGTGATCAGGTACAAGTCTGCCTCAGAGTCCTCGGAGAAGGGTGAGGATGAACTTAAGGTTGAGAAGAGGAAACTTCAGAGAGAGGTGCGAGAGTTGACGCAGCAACTGAGTCAGGCTGAGGCGGCTAAGGCTGCCTTGACTCATCAGTTCGACCAGCTTATGTTCGCCAAGAGATAA
- Protein Sequence
- MEDADECCFYDAVSEIPLSKPRMGNTAGVEGTKGGGRPGLADEFPIVPVIDLRQDDSDDTSSNPEISSRFSDKSAPIDSDKESSTSLNDQSDLDERDDSGRPSMAVSQRDPRCTEASVGADISGEEDAGVATFDDEGSLRVDRVVARGGDLGVNLPDTFGESTTEDCEVQSVDDPVVKEKIVRTLCKDVLTTPPKDEEPVGDVSDVSSSALGDIPRSSPDSDKASVSTEEDTLVSKDKGKTVEDTLLAAESCCDGADSQDSRKCLDEAPSEESANQVGSSAIENSASGSGSSKKVDIGNDITDISKEEEGLVSKVEDEKGKDIDKIPKNRDIVGELGDVKEEDEKKNDIVCEFGGVKEEDEKKNDIVDEFGGVKEEDEKKNYIVGEFVGVKEEDKKNDIVGEFEGVKEEDEKKNDIVDEFGGVKEEDEKKNYIVGGSGDAKEKDGRKNDVVGESGSGNDDNKGVKRVENLPGYIFWEESKKGKEDTADINGMKENAIDKAVDRNDGDYTTEDSDGYDLDDDEDINNKYRSKGNVVDETENEEDADCLNNFLGKSNDQAEARLAARRQARAEAREIRMRELERQQKEIEENTNKSYDSFTAEPGNRTPRVAASVNRSSSLLSGGGNNSYHSSRRSSEDSLEEGISLRDVRHELKEVEDKFRKAMIQNAQLDNEKASLTYQVELLKDRLEDLEESHSQLQREHRDKCREHDQLKRASAKLKEDMEWYKAQLEERDRLIQEKGLIIVGDDQLSSEDESVGDDSPKKPPKRALVSIESAEMLETAGEGSLDVRLRRFAEERNELLDQVRHLKLELEEERSRHKSDAKRIPGASLNGPDTDFEDIQREANKLLGDYKFKLQKAEQDVSTLQANVVRLESQVIRYKSASESSEKGEDELKVEKRKLQREVRELTQQLSQAEAAKAALTHQFDQLMFAKR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444786;
- 90% Identity
- iTF_01445673;
- 80% Identity
- -