Tshe041425.2
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_902151425.1
- Location
- CABFVX010005266.1:14578-33287[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3 6.5e+04 -4.7 3.5 62 94 62 96 53 145 0.63 2 4 0.19 9.6e+03 -2.0 1.5 50 84 237 271 218 336 0.67 3 4 1.2e-113 6.4e-109 366.3 28.4 1 300 503 809 503 809 0.90 4 4 0.00059 30 6.2 3.9 120 173 807 860 806 865 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATGCCGACGAATGTTGCTTCTACGACGCCGTCAGTGAGATACCCCTGAGCAAGCCGAGGATGGGCAACACCGCCGGCGCGGAGGGCGCCAAAGGGGGCGGACGCCCAGGTCTCGCCGACGAGTTCCCCATAGTTCCGGTGATTGACCCGCGACGGGACGACAGTGACGACACCTCGAGTAGTAATCCCGAGATTAGCTCGCGTTCCTCGGATAAATCCGCTCCAATCGATAGCGATAAGGAAAGTTCGACGTCGCTCAGTGATCAATCAGATCTGGACGAAAGAGACGATTCGGGCAGACCGTCAATGGCGGTTTCTCAGAGAGACCAGCGCTGTACAGAGGCGTCCGTCGGCGCCGACAGTTCGGGTGAAGAGGACGCCGGTGTCGCGACCTTTGACGACGAGGGCTCGCTCAGGGGGGACCGTGCCGTGGCGAAGGGGGTTGACCTGGGTGTGAATCTGCCGGACACGTTCGGGGAGAGTACGACTGAAGACTGTGAGGTCCAGAGTGTAGATGACACCGTAGTCGAGGAAAAGATTGTACGCAACCTTCGTAAGGATGTGCTGGCCACGCCCCCCGAGGATGAGGAGCCTGACGGTGAAGTCTCGGACGTGAGTTCCTCGGCCCTTGGAGACATCCCGCGGTCAAGTCCTGACGGTGACAAGTACTCTGTATCCACCGAGCAAGATACTCTAGTGTCCAAAGACAACGGGAAAACCGTTGAGGACACTCTGTTGGCCGCTGAAAGTGGTTGTGATAGGGCTGATTCCCAGGATAGTAGGAAGTGTCTTGATGAGGCACCCTCTGAAGAAAGTTCTGTGATTGACAATAGTGCTTCAAGAAGTGGATCTAGTAAGGAGGTGGACATTGGATATGATGTCACTGACATCAGCAAAGAGGAAGAGAGGTTAGTTTCTAAAGTAGAGGATGAAAAGGGAGAATATATTGATAAGATTCCAAAGAACAAGGATATAGTTGGGGAATTAAAGGATGTAAAGGAGGAAGATGGGAAGAAAAATGATATTGTTGGGGAATTGGGGGATTTAAAGGGGGAAGATGGGAAGAAAAATGATATTGTTGGGGAATTAAAGGATGTAAAGAAGGAAGATGGGGGAAAAAATGATATTGTTGGGGAATTAGAGGATCTAAAGGTGGAAGATGGGAAGAAAAATGATATTGTTGAGGAATTAGGGTCTGCTAATGATGATAACAGGGGTGTCAAAAGAGTAGAAAATGTGCCAGGTAATTTATTTTGGGAGGAAAGCAAGAAAGGGAAAGAAGACACCGCTGACATCAATGGAATGAAAGAGGATGCAATTGATAAAGCTGTGGATAGAAATGATGGTGATTATACTACAGAAGATAGTGATGGCTATGATATTGACGCCGATGAAGATATCAATAACAAATACAGAAGTAAAGAGAATGTGGTCGATGAAACAGAGAACGAAGAAGATGCCGACTACCTGAATAATTTTCTCGGGAAAAGCAATGACCAAGCAGAGGCCCGCCTTGCAGCGAGGAGGCAGGCGAGGGCAGAGGCCCGGGAGATACGCATGCGGGAACTCGAGAGGCAACAGAAGGAGATTGAGGAGAACACCAACAAGAGCTATGACTCCTTCACCGCAGAGCCGGGAAATAGGACGCCCCGTGTGGCCGCCTCCGTGAACCGCAGCAGCTCGCTGCTCTCTGGCGGAGGTAACAACAGTTACCACTCGAGTCGGCGCAGCTCGGAGGACTCGCTGGAGGAAGGGATCAGTCTCAGAGATGTCCGGCACGAGTTAAAGGAGGTGGAAGATAAGTTCCGAAAGGCGATGATACAGAATGCCCAGTTGGACAACGAGAAGGCATCCCTCACCTACCAGGTGGAACTCCTCAAGGACAGGCTGGAAGATCTGGAGGAGTCCCACTCGCAGTTGCAGCGTGAACACCGCGACAAGTGTCGAGAACACGATCAGCTCAAGAGAGCGTCCGCCAAATTGAAGGAAGACATGGAGTGGTACAAGGCGCAGTTGGAAGAGAGGGACAGACTCATTCAGGAGAAGGGCCTTATAATTGTGGGTGACGACCAGCTTTCCAGCGAGGACGAAAGTGTGGGCGATGACTCGCCCAAGAAACCTCCCAAGAGGGCTCTGGTCTCCGTCGAGTCGGCAGAGATGTTGGAAACTGCAGGAGAGGGCTCTTTAGACGTACGGCTGAGGAGGTTTGCGGAGGAGCGCAACGAACTGCTGGACCAAGTGAGGCACCTCAAACTTGAATTGGAAGAGGAGCGCAGCAGACACAAGTCCGACGCCAAGAGGATACCCGGGGCCAGCCTCAACGGCCCTGACACAGATTTTGAGGACATTCAGAGGGAGGCGAACAAACTTCTAGGGGACTACAAGTTCAAGCTACAGAAAGCGGAGCAGGATGTGTCTACACTGCAGGCCAATGTGGTGCGTCTTGAAAGCCAGGTGATCAGGTACAAGTCTGCCTCAGAGTCCTCGGAGAAGGGTGAGGATGAACTTAAGGTTGAGAAGAGGAAACTTCAGAGAGAGGTGCGAGAGTTGACGCAGCAACTGAGTCAGGCTGAGGCGGCTAAGGCTGCTTTGACTCATCAGTTCGACCAGCTTATGTGCGCCAAGAGATAA
- Protein Sequence
- MEDADECCFYDAVSEIPLSKPRMGNTAGAEGAKGGGRPGLADEFPIVPVIDPRRDDSDDTSSSNPEISSRSSDKSAPIDSDKESSTSLSDQSDLDERDDSGRPSMAVSQRDQRCTEASVGADSSGEEDAGVATFDDEGSLRGDRAVAKGVDLGVNLPDTFGESTTEDCEVQSVDDTVVEEKIVRNLRKDVLATPPEDEEPDGEVSDVSSSALGDIPRSSPDGDKYSVSTEQDTLVSKDNGKTVEDTLLAAESGCDRADSQDSRKCLDEAPSEESSVIDNSASRSGSSKEVDIGYDVTDISKEEERLVSKVEDEKGEYIDKIPKNKDIVGELKDVKEEDGKKNDIVGELGDLKGEDGKKNDIVGELKDVKKEDGGKNDIVGELEDLKVEDGKKNDIVEELGSANDDNRGVKRVENVPGNLFWEESKKGKEDTADINGMKEDAIDKAVDRNDGDYTTEDSDGYDIDADEDINNKYRSKENVVDETENEEDADYLNNFLGKSNDQAEARLAARRQARAEAREIRMRELERQQKEIEENTNKSYDSFTAEPGNRTPRVAASVNRSSSLLSGGGNNSYHSSRRSSEDSLEEGISLRDVRHELKEVEDKFRKAMIQNAQLDNEKASLTYQVELLKDRLEDLEESHSQLQREHRDKCREHDQLKRASAKLKEDMEWYKAQLEERDRLIQEKGLIIVGDDQLSSEDESVGDDSPKKPPKRALVSVESAEMLETAGEGSLDVRLRRFAEERNELLDQVRHLKLELEEERSRHKSDAKRIPGASLNGPDTDFEDIQREANKLLGDYKFKLQKAEQDVSTLQANVVRLESQVIRYKSASESSEKGEDELKVEKRKLQREVRELTQQLSQAEAAKAALTHQFDQLMCAKR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444786;
- 90% Identity
- -
- 80% Identity
- -