Tbat016417.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147785.1
- Location
- LR990489.1:10890971-10906735[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-79 8.8e-75 252.2 22.9 1 270 125 391 125 414 0.89 2 2 1 2.5e+04 -8.3 14.9 1 143 411 457 411 485 0.56
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCCGAAGTGGCCACGCCTGATAACAGTGACGAGGAGAGCGGGGAAGCCTTCACTGACGGTGATTTTGGTGATTCCGACGAAGAAACTATTGTAGATAAAAACAATGAAACCAAATCGTCGCATATACCTATCAATGAGACTGTAAACGAAGAAATCGGAAATATGAATGATTCAGTAGATGATGCGGACCAAGCTAATGGCTCAGCACATCACAATAATGTTAACGGACATAAGAGTTGTGATAATGGACATATAAGTGAGTCCGAAGCCCATAGTCAGGCGAAGATGGAGTTTAGAAGGGATTCCCACGGTGATCAGAACCCTTCAATCGTTGGAATACTCGGTGATCAACAGAATCATGCAGAGCAGCGTCTCGCGGCGCGGCGGGCGGCCCGTGCGGAGGCGCGCGAGATCCGCATGAGGGAGCTTGAGAGGCAGCAGCGGGAACAGGAGGACCATGCAGACAAAGCGTACGATATGTATGGGGCGAAAACAGAAACGGTGGGTCGTCGCGGCGGTACCCGGCTGGCGGCTCTCAGCCCGGCCGTGGCTGCGCACTCGCCGCGCCGCAGTTCTGAAGACTCCGCCGACGACGCCTTCAACGTTAAGGACCTTAGGCACGAATTGAAAGAAGTGGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTCCATGAGGAGTATGCACAGCTTCAGCGGGAGCACAAGGAGAAGTGTTCGGCGCACGAGCGTTTAAAACGCGAGCACGTGACTCTAGAGCGTGAAGTCGCGTTGGCTAGGGATGCAGTGAGGGCTAGAGATGCAGCTGCTGCCGCCGCGGGGTTCGCGTTTGTGGACGCGGGGGTTGAAGGGGTCGGGGTGGGGGTCGACGCGGGGTCGGGCATGCCGGCCCTGGCGCTGGTCTCCCACCACTCGCAACAGCTGCTCGATGATGCCGGGGAAGGGACTCTAGATGTCCGATTGCAAAAGTTGTTGAGCTCGAAACAGTCTCTCGAGTCGGAGGTGCGCAAGCTCAAGTTGCAGCTCAACGAGGAGCGCGCCGTGAGGCAGAACGGAGTTGCCACCCACCACGATCAAGAGTATGAGAATGAATTGGAGTCCGTCCGTCGGTCCCTCACCGAAGCCCGAGGCCGGGCTGCCCGCGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGGCGGCGGCGCGGCTCGACGCGCAGCTCGCCCGCCTGCGCGCGAGGCAGGACCACCAGGACGACCACGAGGAGAAGCTCAAGCACGAGCGGAGGAGGCTGCAGCGAGAGGCAAGGGAGGCCCTCAATCGAGTCGAAGAGTTGGAAACTGAGAACAGTCACCTGACGAAACGCCTCGACAAACTCAAGAACGCAAAGTCAGCACTCCTTAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGEAFTDGDFGDSDEETIVDKNNETKSSHIPINETVNEEIGNMNDSVDDADQANGSAHHNNVNGHKSCDNGHISESEAHSQAKMEFRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGAKTETVGRRGGTRLAALSPAVAAHSPRRSSEDSADDAFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHVTLEREVALARDAVRARDAAAAAAGFAFVDAGVEGVGVGVDAGSGMPALALVSHHSQQLLDDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAVRQNGVATHHDQEYENELESVRRSLTEARGRAARAEAEAALQAAAAARLDAQLARLRARQDHQDDHEEKLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761699; iTF_00007106; iTF_01083346; iTF_01416799;
- 90% Identity
- -
- 80% Identity
- -