Afla012850.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947623365.1
- Location
- OX392472.1:1998110-2016625[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-78 3.4e-74 250.2 14.6 1 297 126 420 126 422 0.89 2 2 1 2.3e+04 -7.1 14.0 1 49 419 466 419 495 0.58
Sequence Information
- Coding Sequence
- ATGATGGGGCATCGATCTGAAGTGGCCACGCCTGATAATAGTGATGAGGAGAGCGGCGAGGCCTTCACCGACGCTGATTTCGGCGATTCCGATGAAGAAACTATTGTAGAAAATAACGATGATACCAAATCTTCGCATATTCCGATCAATGAGACTGTAAACGAAGAACTTGGAAAGATGAATGATTCAATAGATGATTTAGACCTAGCTAATGGCTCCGAGAGTCACACCAATGTTAACGGACATAAGAGTAGTGAAAATGGACATTTAAGCGAGTCAGAAGCTCACAGTCAAGCGAAAACAGAGTTTAGGAGGGATTCCCACGGTGATCAGAATCCATCAATCGTTGGAATTCTCGGTGACCAACAAAATCATGCTGAGCAGCGATTGGCGGCGCGTCGAGCGGCGCGGGCAGAGGCGCGGGAGATCCGCATGCGGGAGCTGGAGCGACAGCAGCGGGAACAAGAGGACCATGCTGACAAGGCATACGACATGTATGGCAAGACAGAAACGGTGGGTCGCCGCGGCGGGTCCCGGCTGGCGGCGCTCAGCCCGGCCGCGGGGCTCTCGCCGCGCCGCGCCTCGGAGGACTCCGCCGACGACGCCTTCAATGTCAAGGACCTGAGGCACGAATTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGAATAGAGGAGCTGCACGAGGAGTATGCGCAGTTGCAGCGGGAGCACAAAGAGAAATGCTCACTCCACGAGCGTTTAAAACGCGAGCACGTGTCCCTCGAGCGGGAAGTGATGCTGGCTCGAGACGCGGTGCGGGCGCGCGACGCGGCGGCCGCGGCCGCGGGGTTCGCCTTCGTCGACGCGGGGGCCGACGGGGGCCCGCCGGGGGCCGCGGGGGGCCCGCAGGGGGCCGACGGGGGCCCGCAGGGGGGCTGCCCCGCGCTCGCGCTCGTGTCGCATCACTCGCAGCAGCTGCTCGATGACGCCGGGGAAGGGACATTGGACGTCCGGTTGCAGAAGTTGTTGAGCTCGAAGCAGTCGCTAGAGTCGGAGGTGCGCAAGCTGAAGCTACAGTTGAACGAGGAGCGAGCCGCTCGACAGAACGGGGTCGCTAACCATCACGATCAGGACTATGAGAATGAATTGGAGGCGGTCCGCAAGTGCGTGACGGAGGCGAAGGGTCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCCGCCGTGGCGCGCCTCGAGGCGCAGGTGTCGCGTCTGCGCGCGCGCCAGGACCACCAGGACGACCACGAGGAACACCTCAAGCAGGAGAGGAGGAAGCTGCAACGAGAGGCAAGAGAAGCCCTCAACCGAGTCGAAGAGTTGGAGACGGAGAACAGCCACTTAACCAAACGTCTCGACAAACTCAAAAACGCCAAGTCAGCGCTCCTAAAGGATCTGTGA
- Protein Sequence
- MMGHRSEVATPDNSDEESGEAFTDADFGDSDEETIVENNDDTKSSHIPINETVNEELGKMNDSIDDLDLANGSESHTNVNGHKSSENGHLSESEAHSQAKTEFRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGKTETVGRRGGSRLAALSPAAGLSPRRASEDSADDAFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSLHERLKREHVSLEREVMLARDAVRARDAAAAAAGFAFVDAGADGGPPGAAGGPQGADGGPQGGCPALALVSHHSQQLLDDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQDYENELEAVRKCVTEAKGRAARAEAEAALQAAAVARLEAQVSRLRARQDHQDDHEEHLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437066;
- 90% Identity
- -
- 80% Identity
- -