Odup004809.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_951361185.1
- Location
- OX592694.1:1692699-1705462[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-76 9.1e-73 245.7 22.5 1 297 124 409 124 412 0.88 2 2 3 2.7e+04 -5.7 13.5 1 48 408 454 408 482 0.61
Sequence Information
- Coding Sequence
- ATGATGGGTTATCGTTCTGAAGTGGCCACGCCTGATAATAGTGATGATGAGAGCGGCGATGCCTTCACCGACGGTGATTTCGGTGATTCTGATGAAGAAGCTATTGTTGAGAAAAATGATGATACCAAATCGTCGCATATCCCAATCAATGAGACTGTAAACGAAGAACTTGATAAGATGAATGCTGGTGATTTGGACCAAGCTAATGGCTCAGAGAACCACGATAAAGTTAATGGATATAAAAGTAGTGAAAATGGACATTTAAGTGAGTCGGAAGCGCAAAGTCAAGCGAAAACAGAGTTTAGGAGGGATTCTCACGGTGATCAGAATCCATCGATCGTTGGAATTCTCGGTGACCAACAAAACCATGCGGAGCAGCGATTGGCGGCGCGGCGTGCGGCGCGTGCCGAGGCGCGGGAGATCCGCATGCGAGAGTTGGAGCGTCAGCAACGCGAACAAGAGGACCATGCTGACAAAGCATATGACATGTATGCAGAAACGGTGGGGCGACGCGGCGGCACCCGGCTGGCTGCGCTCAGTCCGGGCGTCGTGGTCTCGCCGCGGCGGAGCTCTGAGGACTCGGCGGACGACGCCTTCAATGTCAAGGATCTTAGGCACGAATTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATACTGAACGCCCAGCTGGACAACGACAAGGCAGCGCTTGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTTCACGAGGAGTACGCACAGCTGCAGCGGGAGCATAAAGAGAAATGCTCCGCTCACGAGCGTTTAAAACGTGAGCACGTAGCTCTGGAGCGCGAGGTGCTGCTCGCGCGGGACGCGGTGAGGGCGAGAGACGCGGCGGCCGCGGCCGCGGGGTACGCCTTCGTGGACGCGGGGGCCGAGGGGGCGAGTGTGGGGGCCGAAGGGGCCAGCGTGGGGGGCTGTCCCGCGCTCGCGCTCGTGTCGCATCACTCGCAGCAGCTGCTCGATGACGCCGGGGAAGGAACGTTGGACGTCCGATTGCAGAAGTTGTTAGGCTCGAAGCAGTCGCTAGAGTCGGAGGTGCGCAAGTTAAAGCTACAGTTGAACGAGGAGCGAGCTGCCAGACAGAACGGAGTGGCCAATCATCACGACCAAGAGTATGAGAATGAATTGGAGACGGTTCGCAAGGCGCTGACGGAGGCGAAGGGTCGTGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGGGTGCGCGCGGCTCGAGGCGCAGGTGGCGCGGCTGCGGGCCCGGCAGGACCACCAGGACGACCACGAGGAGCAGCTCAAGCAGGACCGCAGGAAGCTGCAGCGAGAGGCAAGAGAAGCTCTCAATCGAGTCGAGGAGTTGGAGACGGAAAACAGCCACTTAACCAAACGTCTGGACAAACTCAAAAACGCCAAGTCAGCTCTCCTCAAGGACCTGTGA
- Protein Sequence
- MMGYRSEVATPDNSDDESGDAFTDGDFGDSDEEAIVEKNDDTKSSHIPINETVNEELDKMNAGDLDQANGSENHDKVNGYKSSENGHLSESEAQSQAKTEFRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPGVVVSPRRSSEDSADDAFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHVALEREVLLARDAVRARDAAAAAAGYAFVDAGAEGASVGAEGASVGGCPALALVSHHSQQLLDDAGEGTLDVRLQKLLGSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKALTEAKGRAARAEAEAALQAAGCARLEAQVARLRARQDHQDDHEEQLKQDRRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437066;
- 90% Identity
- iTF_01415859; iTF_01416799;
- 80% Identity
- -