Thoc034764.1
Basic Information
- Insect
- Tetragonula hockingsi
- Gene Symbol
- -
- Assembly
- GCA_010645185.1
- Location
- WIUV01019789.1:1-848[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8 1.6e+04 -3.3 0.0 29 34 73 78 73 84 0.75 2 2 9.8e-17 4.2e-13 49.8 0.0 2 42 117 158 116 161 0.94
Sequence Information
- Coding Sequence
- TATGAACCGGTCTGTTCCACAGGATTGCAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACTACGCCCGAAATAACAGCTTCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGCAGTTGCGCCCTGACGAATTACTCGAACTCTCCGCACGGGACGTTGCAGCACGCGTCGTCCAGCGGATCGACACCGTCGACACAGTGCCCGAGTAACTGCCAGAGTCCCTGCGCCAGTCCGCAGGCCGCAATTAAGAGGAAACGATCGACAAACCCGCAGGCAGACGAGAACTTTATCAGAGCGTTAGACGCCGTTCGATATGGCGGCATAGGTTTCTGTAAAGCGGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTGGAGTACAAAAAGCGTGGTTACCCGAACAACCGACCGAGCTTGAAATCGAGGGTCAAGCAAGAAGTGAATTcctcgccgccgccgccagcCCCGTCCGCGCAACCGGTTAATTCGCAGAGTCCAACGCCGATGGGACCTCCCACCACTCCGCACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACCACACATCCTCATACGATGTTAAGTGGTTACATCGATAGCAGGCATACGGATTACGCATTGCCCAGTCCTACAATGCCAATCAATTTACATGGCGTGAACTACAATGCGATGTGA
- Protein Sequence
- YEPVCSTGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSSCALTNYSNSPHGTLQHASSSGSTPSTQCPSNCQSPCASPQAAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPPAPSAQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTTHPHTMLSGYIDSRHTDYALPSPTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01419559; iTF_01420854; iTF_01418271; iTF_01537766; iTF_00414218; iTF_01207267;
- 90% Identity
- iTF_01419559; iTF_01420854; iTF_01418271;
- 80% Identity
- iTF_01418271;