Ccal027286.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012706.1:56746233-56747039[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-17 2e-13 51.2 0.0 2 42 112 153 111 156 0.94 2 2 3.9 1.1e+04 -2.3 0.0 30 39 156 166 155 170 0.71
Sequence Information
- Coding Sequence
- ATGGAGCATACGTATCCACGTTTTGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCCTCGTCGGCATTCACGACGCCTGAAATAACAGCGACATCGAGCATCAGCGAGCACCAGTACCAGTCGGCAGGTGGTTCAAGTACGACGACTGCGTCGAGTTGTGCCTTGACGAGCTACCCGAATACATCGTCGCACGGATCTCTGCAGCACGCGACAAACTCGAGTGGCGGGGGTGGCGGAGGCTCGACGCAATGTTCAAGCAACTGCCAGAGTCCGTGTGCCAGTCCCCAGACGACCATTAAGAGGAAAAGGTCGACGAACCCCCAAGCGGACGAGAATTTTATTCGGGCTCTCGAAGCTGTACGTTACGGTGGTATAGGTTTTTGTAAAGCCGCCCGAATGTTCGGAGTTAACAATCGAACTCTGTGGTTAGAATATAAGAAACGTGGCTATCCAAATAATCGTCCGAGCTTAAAGTCCCGTGTCAAACAGGAAGTTAATACCTCCCCACCACCGGCATCGTCTACTCAACCAGTTAACTCGCAGAGCCCGACCCCCATGGGCCCCCCCACAACACCCCACAGTACACATAACACTCATCCGACTCACACGATGCTCACCGCTCACACACCTCACACAATGCTATCGGGTTATATCGATAGTAGGCACACGGATTACTCACTTCCCAGCACAACCATGCCGATTAACCTTCATGGCGTCAATTACAATTCTATGTGA
- Protein Sequence
- MEHTYPRFALSSCQTNLSIQASSAFTTPEITATSSISEHQYQSAGGSSTTTASSCALTSYPNTSSHGSLQHATNSSGGGGGGSTQCSSNCQSPCASPQTTIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNTSPPPASSTQPVNSQSPTPMGPPTTPHSTHNTHPTHTMLTAHTPHTMLSGYIDSRHTDYSLPSTTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420196;
- 90% Identity
- iTF_01207267;
- 80% Identity
- -