Tdav012463.1
Basic Information
- Insect
- Tetragonula davenporti
- Gene Symbol
- -
- Assembly
- GCA_010645165.1
- Location
- WIUW01009133.1:1-841[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 7.8e+03 -3.1 0.0 29 34 65 70 65 78 0.75 2 2 9.4e-17 2.2e-13 49.9 0.0 2 42 109 150 108 153 0.94
Sequence Information
- Coding Sequence
- TTGCAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACTACGCCCGAAATAACAGCTTCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGCAGTTGCGCCCTGACGAATTACTCGAACTCTCCGCACGGGACGTTGCAGCACGCGTCGGCCAGCGGATCGACACCGTCGACACAGTGCCCGAGTAACTGCCAGAGTCCCTGCGCCAGTCCGCAGGCCGCAATTAAGAGGAAACGATCGACAAACCCGCAGGCAGACGAGAACTTTATCAGAGCGTTAGACGCCGTTCGATATGGCGGCATAGGTTTCTGTAAAGCGGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTGGAGTACAAAAAGCGTGGTTACCCGAACAACCGACCGAGCTTGAAATCGAGGGTCAAGCAAGAAGTGAATTcctcgccgccgccgccagcCCCGTCCGCGCAACCGGTTAATTCGCAGAGTCCAACGCCGATGGGACCTCCCACCACTCCGCACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACCACACATCCTCATACGATGTTAAGTGGTTACATCGATAGCAGGCATACGGATTACGCATTGCCCAGTCCTACAATGCCAATCAATTTACATGGCGTGAACTACAATGCGATGTGA
- Protein Sequence
- LQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSSCALTNYSNSPHGTLQHASASGSTPSTQCPSNCQSPCASPQAAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPPAPSAQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTTHPHTMLSGYIDSRHTDYALPSPTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420196;
- 90% Identity
- iTF_01420196;
- 80% Identity
- -