Tcar026791.1
Basic Information
- Insect
- Tetragonula carbonaria
- Gene Symbol
- -
- Assembly
- GCA_010645115.1
- Location
- WIUU01018183.1:149-4024[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4 1e+04 -3.1 0.0 29 34 60 65 60 72 0.75 2 2 9e-17 2.7e-13 50.0 0.0 2 42 104 145 103 148 0.94
Sequence Information
- Coding Sequence
- ATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACTACGCCCGAAATAACAGCTTCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGCAGTTGCGCCCTGACGAATTACTCGAACTCTCCGCACGGGACGTTGCAGCACGCGTCGTCCAGCGGATCGACACCGTCGACACAGTGCCCGAGTAACTGCCAGAGTCCCTGCGCCAGTCCGCAGGCCGCAATTAAGAGGAAACGATCGACAAACCCGCAGGCAGACGAGAACTTTATCAGAGCGTTAGACGCCGTTCGATATGGCGGCATAGGTTTCTGTAAAGCGGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTGGAGTACAAAAAGCGTGGTTACCCGAACAACCGACCGAGCTTGAAATCGAGGGTCAAGCAAGAAGTGAATTcctcgccgccgccgccagcCCCGTCCGCGCAACCGGTTAATTCGCAGAGTCCAACGCCGATGGGACCTCCCACCACTCCGCACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACCACACATCCTCATACGATGTTAAGTGGTTACATCGATAGCAGGCATACGGATTACGCATTGCCCAGTCCTACAATGCCAATCAATTTACATGGCGTGAACTACAATGCGATGTGA
- Protein Sequence
- MEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSSCALTNYSNSPHGTLQHASSSGSTPSTQCPSNCQSPCASPQAAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPPAPSAQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTTHPHTMLSGYIDSRHTDYALPSPTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420196;
- 90% Identity
- iTF_01420196;
- 80% Identity
- iTF_01420196;