Xcam003481.1
Basic Information
- Insect
- Xiphydria camelus
- Gene Symbol
- -
- Assembly
- GCA_963678675.1
- Location
- OY783192.1:14298810-14312094[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-15 3.2e-13 49.6 0.0 2 42 142 183 141 186 0.94 2 2 6.9 1.6e+03 -0.6 0.0 29 39 185 196 185 200 0.75
Sequence Information
- Coding Sequence
- ATGTGCATTTACCAAAGCCATATCGATTCAAATACTCTGAAAAGCGTTTTACATTCCTACTCTTGTGCTCTGACCAAAGATGAATTGGTCTGTCCCACAGGATTGCAATGGACAATAATGGAGCACACGTATCCACGTTTCGCTCTGTCTTCGTGTCAAACGAATTTGTCGATCCAAGCATCGTCGGCATTTACGACGCCTGAAATTACCGCCTCCCCGACCATCAACGATCAGTACTCCGGTACCAGCACTACTGGTTCCAGTTGTGCACTGACGAGCTATCCGAACTCTTCTCACGGCGCATTGCAGCACACACCATCAAGCGGCCCCTCGCCATCGACACAGTGTACCAGTAACTGTCAAAGTCCCTGTGCCAGTCCACAAACTGCGATCAAGCGGAAACGTTCCACAAATCCTCAAGCGGACGAAAATTTTATAAGGGCACTCGACGCCGTACGTTATGGCGGGATAGGTTTTTGCAAGGCGGCAAGAATGTTTGGTGTCAACAATCGAACGCTTTGGCTAGAATATAAGAAGCGCGGTTATCCGAACAATCGTTCGAGTTTAAAATCCAGAGTAAAGCAGGAAGTTAACACTTCACCCCCACCTGCTGCTCCGTCGACACAGCCTGTCAGTTCGCAAAGTCCTACGCCAATGGGGCCTCCTTCTACACCTCATAGTACACACAATACCCATAGTACTCACACCATGCTCACGAGTCATAATCCCCATAGTATGTTGAGTGGTTACATAGACAGCCGACATATAGATTATGCTCTTCCAAGCACCACGATGCCTATTAATTTGCATGGTGTTAATTACAATTCTATGTGA
- Protein Sequence
- MCIYQSHIDSNTLKSVLHSYSCALTKDELVCPTGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASPTINDQYSGTSTTGSSCALTSYPNSSHGALQHTPSSGPSPSTQCTSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRSSLKSRVKQEVNTSPPPAAPSTQPVSSQSPTPMGPPSTPHSTHNTHSTHTMLTSHNPHSMLSGYIDSRHIDYALPSTTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420196;
- 90% Identity
- -
- 80% Identity
- -