Tmel045717.1
Basic Information
- Insect
- Tetragonula mellipes
- Gene Symbol
- -
- Assembly
- GCA_011634685.1
- Location
- WINE01009465.1:1-911[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4 2.1e+04 -3.3 0.0 29 34 73 78 73 84 0.75 2 2 8.7e-17 5.5e-13 49.8 0.0 2 42 117 158 116 161 0.94
Sequence Information
- Coding Sequence
- TATGAACCGGTCTGTTCCACAGGATTGCAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACTACGCCCGAAATAACAGCTTCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGCAGTTGCGCCCTGACGAATTACTCGAACTCTCCGCACGGGACGTTGCAGCACGCGTCGTCCAGCGGATCGACACCGTCGACACAGTGCCCGAGTAACTGCCAGAGTCCCTGCGCCAGTCCGCAGGCCGCAATTAAGAGGAAACGATCGACAAACCCGCAGGCAGACGAGAACTTTATCAGAGCGTTAGACGCCGTTCGATATGGCGGCATAGGTTTCTGTAAAGCGGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTGGAGTACAAAAAGCGTGGTTACCCGAACAACCGACCGAGCTTGAAATCGAGGGTCAAGCAAGAAGTGAATtcctcgccgccgccgccagcCCCGTCCGCGCAACCGGTTAATTCGCAGAGTCCAACGCCGATGGGACCTCCCACCACTCCGCACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACCGCACATCCTCATACGATGTTAAGTGGTTACATCGATAGCAGGCATACGGATTACGCATTGCCCAGTCCTACAATGCCAATCAATTTACATGGCGTGAACTACAATGCGATGTGA
- Protein Sequence
- YEPVCSTGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSSCALTNYSNSPHGTLQHASSSGSTPSTQCPSNCQSPCASPQAAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPPAPSAQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTAHPHTMLSGYIDSRHTDYALPSPTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420196;
- 90% Identity
- iTF_01420196;
- 80% Identity
- -