Tmes025726.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000385.1:785564-788969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.019 4.1 9.4 0.2 6 21 12 27 6 28 0.86 2 13 0.51 1.1e+02 5.0 0.3 1 12 229 240 229 249 0.89 3 13 0.014 2.9 9.8 1.4 1 23 357 379 357 379 0.97 4 13 9.1e-06 0.0019 19.9 0.4 2 23 383 404 382 404 0.98 5 13 8e-05 0.017 16.9 2.9 1 23 415 437 415 437 0.98 6 13 0.037 7.8 8.5 0.0 1 23 456 477 456 477 0.94 7 13 0.00073 0.15 13.9 0.0 2 23 483 504 482 504 0.95 8 13 5.5e-05 0.012 17.4 3.7 1 23 530 552 530 552 0.99 9 13 1.9e-06 0.0004 22.0 3.7 1 23 558 580 558 580 0.96 10 13 0.00012 0.024 16.4 4.4 1 23 586 608 586 608 0.98 11 13 1.3e-06 0.00028 22.5 0.8 1 23 614 636 614 636 0.98 12 13 8.5e-05 0.018 16.8 0.2 1 23 640 662 640 662 0.99 13 13 0.00037 0.076 14.8 0.2 1 23 670 692 670 692 0.97
Sequence Information
- Coding Sequence
- ATGGGATCAATGAGTCTAATATGTCCGATGTGCTGCGGGGAAACATTCAACAATCCTCAGTCCTTAAAGTATCATTTATTAAGTATTACGGACAATCTATATTGTCCGAGTTGTTCAGACCGATTCGATTCCGTATTAGCATTGATTCAACATTTGGATCGTTGCGGTCAGTCCCCAGAACCAGATACAGAAACAGAAGTTTTAATGGAAGCAAACGTCGAACAAATCAATCAGAGTTTTTTGGATGGTGTCAAACACGGAGATATCATGATCGTCGGAGAACCGCGTTCTATTCGACTCGCAGATAACGGAGAGATCAATGTGGTGGAAAAAATGGACGTTGATAAAATAAAGTCTGATATTATTGCGTCAGTTATGGAAGATAAAAGTCGATCTCCTTCGTCTGTAGTCGATGAATCTAATGCTAAATCTCCGAATCGACAAGCATTGGTAGAACTGAAGGTAGTCGAAGAGGACACTGAAACAGTGAATGAGAAAAATATTATTACCATATTACCCGGTGACTCGGAACTCCTTGATAATGATGATAGTAATTTAATGGGTGATGGTCATTCGCTTATGGAGGAGGACGACGACACTGAGGATACTAACGACGGAGGAATTCTACAAGTGAAGCAAGAAGTCTGCGAGGCAAAACTTGAAGAGTTAGAGGCTGAGGCATTATACAGCTGCAGTAGTTGCGGCATGAGCTTCAACTCAGTTTTAGAACATATCAAGGAGTTTCACGATGGTCAAGAGGTAGTGTTAGAAATGGCGGAGCAACAGTTAGACGAGCTGCCTGCACCGGCGTTGATTACACCGCCCGAAGAGCCAACATCTGTGATAGCAAATCGTCAACGTCAAATGATGAATACTTTAAGAACAGAGGAATGTGTGGACAGCGAGGGCAGATTGTACACCAGAAAAGTGGTTCAGATTGAAAGATTTTGGGATCGTCCAACGTCTTCGCATCCACCTGCTAAGGCGCCGATGATTGAGAAATTTTTTTCGAATGTGGAAGGTGTGAAGGTCAGAGACAAGAACATACCTACAGGTCCAACACGGATGTACCGTTGCAACCAGTGCCTTGAAAATTTTCCAAAGTTGGGAGACTTTAGAGTTCATGTATGTCTTCATGGTAATAATCAATGTGGCCATTGCGATCAAGCTTTTGCAACAGCCAGGGCATTGCAGCTACACATGAAGGTACATGAAAGTGAATCTGATGGGGTCCAGCGTATGTTTGTCTGTTCTACTTGTGGCACAGAATTTTCATCTCACAAAAGCCTACGATTACACTCTCGAATGCATGCACCGGTGAGGGCGAGGCATGTTGACGCTCCCGAAGGGACTCACAGTGCCACCTTTACTTGTCCTGAATGTGGACTAGTTTTATCCGAATCTTATCGAGTCGCACACATGGCTCGACATTCGGGTGGTTCGGTGACCTGCAGCGTTTGCAATCGAAAGTTTGATTCTGCAGATAGTTTGGCAATGCATGCAGCGGTACATACAGAGTCGAATCATTCCCACTCGCCGACACCACCACGAGGCGAGGGGAGCGATAGTACAGATGCCCAGAAACCTTATCAGTGCCAGCATTGCGGACGACGATTTGCTAGACCGCATGAAAAAGTGAAACATGAACGTATACATACTGGGGAGAAACCGCATGCTTGTGAGGTATGTGGCAAGACGTTTCGAGTGTCTTATTGTCTGACTTTACATATGCGAACTCATACCGGAGTTCGTCCATACGTTTGTCAGCATTGTGGCAAGAGATTCAAAGCATCATCTGTTTACAATCATCACTTGCTTACTCATGGAGAAGAGAGAGCATACACATGTCCGTACTGTCCAAAAACTTTTAAAACTCGAGTACAACTTGCTGGTCATAAAAATAGCCACACTAAACCGTTCAGATGTACGGAATGCTCAAGACCATTTGCCTCTTTATATGCAGCTAGAGCGCATATACAAACTCATAAGAAAGACAATAATCTTAAATTCAGTTGTTATATCTGTGGAGCTTCGTACGGCCGAGCATTTGCCCTTAAAGATCATTTAAAGCAACATGGCCAGGACGTATTAGCTCCTCCTGAACCTGCTAGAGAAGAAGAAGTTCCAGAAGGAGATGATTTTCTTCTTGCCGAAGAGGAAGTAGAAGATGATGAGCTTGTTATTCCTTCACCTTTGCCAGTTGCTCAATCCTCAGAGGCAGAAGATTCAGATTAG
- Protein Sequence
- MGSMSLICPMCCGETFNNPQSLKYHLLSITDNLYCPSCSDRFDSVLALIQHLDRCGQSPEPDTETEVLMEANVEQINQSFLDGVKHGDIMIVGEPRSIRLADNGEINVVEKMDVDKIKSDIIASVMEDKSRSPSSVVDESNAKSPNRQALVELKVVEEDTETVNEKNIITILPGDSELLDNDDSNLMGDGHSLMEEDDDTEDTNDGGILQVKQEVCEAKLEELEAEALYSCSSCGMSFNSVLEHIKEFHDGQEVVLEMAEQQLDELPAPALITPPEEPTSVIANRQRQMMNTLRTEECVDSEGRLYTRKVVQIERFWDRPTSSHPPAKAPMIEKFFSNVEGVKVRDKNIPTGPTRMYRCNQCLENFPKLGDFRVHVCLHGNNQCGHCDQAFATARALQLHMKVHESESDGVQRMFVCSTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTHSATFTCPECGLVLSESYRVAHMARHSGGSVTCSVCNRKFDSADSLAMHAAVHTESNHSHSPTPPRGEGSDSTDAQKPYQCQHCGRRFARPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYVCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEVPEGDDFLLAEEEVEDDELVIPSPLPVAQSSEAEDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414403; iTF_00938945; iTF_01411750; iTF_01412550; iTF_01303656; iTF_00939805; iTF_00175240; iTF_00174489; iTF_00175902; iTF_01200377; iTF_00060540; iTF_00719631; iTF_00718817; iTF_01048379; iTF_01049105;
- 90% Identity
- iTF_01414403; iTF_01412550; iTF_01411750; iTF_01303656;
- 80% Identity
- -