Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037740.1:31069501-31073113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.016 2.4 9.7 0.2 3 21 8 27 6 28 0.85

2 14 0.14 21 6.7 0.1 2 20 34 52 33 54 0.91

3 14 0.5 75 5.0 0.3 1 12 226 237 226 246 0.89

4 14 0.17 25 6.4 1.4 1 20 354 373 354 375 0.94

5 14 3.6e-06 0.00054 21.1 0.7 2 23 380 401 379 401 0.98

6 14 7.8e-05 0.012 16.9 2.9 1 23 412 434 412 434 0.98

7 14 0.0075 1.1 10.7 0.1 1 23 453 474 453 474 0.90

8 14 0.00034 0.05 14.9 0.0 2 23 480 501 479 501 0.95

9 14 5.4e-05 0.0081 17.4 3.7 1 23 527 549 527 549 0.99

10 14 1.9e-06 0.00028 22.0 3.7 1 23 555 577 555 577 0.96

11 14 0.00011 0.017 16.4 4.4 1 23 583 605 583 605 0.98

12 14 1.3e-06 0.0002 22.5 0.8 1 23 611 633 611 633 0.98

13 14 8.3e-05 0.013 16.8 0.2 1 23 637 659 637 659 0.99

14 14 0.00036 0.055 14.8 0.2 1 23 667 689 667 689 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.016	2.4	9.7	0.2	3	21	8	27	6	28	0.85
2	14	0.14	21	6.7	0.1	2	20	34	52	33	54	0.91
3	14	0.5	75	5.0	0.3	1	12	226	237	226	246	0.89
4	14	0.17	25	6.4	1.4	1	20	354	373	354	375	0.94
5	14	3.6e-06	0.00054	21.1	0.7	2	23	380	401	379	401	0.98
6	14	7.8e-05	0.012	16.9	2.9	1	23	412	434	412	434	0.98
7	14	0.0075	1.1	10.7	0.1	1	23	453	474	453	474	0.90
8	14	0.00034	0.05	14.9	0.0	2	23	480	501	479	501	0.95
9	14	5.4e-05	0.0081	17.4	3.7	1	23	527	549	527	549	0.99
10	14	1.9e-06	0.00028	22.0	3.7	1	23	555	577	555	577	0.96
11	14	0.00011	0.017	16.4	4.4	1	23	583	605	583	605	0.98
12	14	1.3e-06	0.0002	22.5	0.8	1	23	611	633	611	633	0.98
13	14	8.3e-05	0.013	16.8	0.2	1	23	637	659	637	659	0.99
14	14	0.00036	0.055	14.8	0.2	1	23	667	689	667	689	0.97

Sequence Information

Coding Sequence: ATGGGATCACTGAATCTTGTTTGTCCAATGTGCTGTGGCGAGACTTTCAACAATCCTCAGTCATTGAAGTATCACTTACTAAGTATTACGGACAATTTATACTGCCCTGGATGTTCCCAACGTTTTGACTCTGTATTAGCGTTGATTCAACACCTGGATCACTGCGGTCAGTCACCCGAGTCAGAAAGTGAAGTCCTGATGGAGGCAAATGTGGAACAAATTAGCGAGAGCTTCTTGGCCACTGTCAAGGATGGAGACATTATGATTGTGGGCGAACCAAGTTCCATTCAAGCTGGTGATAATGAAGAATTCAATGTGATGGAAAAAATGGATGTTGAGGAAAGACAAGTCAATGGTGTTACCCCTGTGCCGAGAGCTCGGGAATCACCAGTTCCGTCTGTAGTTAATGAAGCTGATAGCAAATCTCCAATACCAAATCCATTGGTAGAATTAACAACAATTGAAGCAGACAATCAAGATACTGATAAAAATCTTATTACTATTTTATCTGGGGGTCCAGAACTTATGGACAATGAAGACAGTAATTTGATGAGCCATACTCATAGTCTCATAGCAGATGTTGAAGAAGTAGAAGACATCAATGATCCAGAACTTCTTCATGTAAAGCAGGAAATCTGCGAGGTAAAACTTGAAGAGTTGGAAGCTGATGCCATGTATAGCTGCAGTAGTTGCGGCATGAGTTTCAACTCAGTTTTGGAGCATATCAAAGAGTTTCACGATGGGCAAGAGGTTGTCTTAGAAATGGCGGAACCACCACTGGAAAACCTACCAACACCTACTTCGATTACCCCGCCGCAGGAGCCGACACCTGTAACAGGAAGTCGTCAGCGGCAAACAATGAATACTTTAAGAACAGAGGAATGTGTCGATAGTGAGGGCAGATTGTATACAAGAAAAGTGGTACAGATTGAGAGATTTTGGGATCGGCCAACATCTTCACCTGCACCTGCCAAAGCACCTAtgattgagaaatttttttcaaacgtggAAGGTGTAAAGGTCAGAGATAAGAATCTACCTCCAGGACCAACACGGATGTACCGTTGCAATCAGTGCCTTGAACATTTTGCTAAGTTGGGAGGTTTTCGGGTCCATGTCTGTCTTCGTGGTAATAATCAATGCAACCACTGCGATCAAGCATTTGCTACAGCCCGAGCATTGCAGCTACATATGAAGGTACATGATAGTGAAACAGAAGGGATGCAGCGTTTGTTCGTCTGTTCCACATGTGGCACAGAGTTCTCATCTCACAAAAGTCTTCGGTTGCATTCGCGAATGCATGCGCCAGTGAGGGCAAGGCATGTTGATGCTCCAGAAGGCACTCACAGTGCCACCTTTACTTGCCCTGAATGTGGAAAAGTTCTGTCTGAATCATATCGAGTAGCACACATGGCTTTGCATTCTGGTGGTTCAGTTACCTGTACTATTTGCAATCGGAAGTTTGAATCAGCTGATAGTTTGGCAATGCATGCTGCAGTCCATACTGAGCCAAATCAGTCTCATTCACCAACTCCACCTCGAGGGGAAGGAAGTGAAAGTGCTGACGCCCAAAAACCTTATCAGTGCCAACATTGTGGTCGTCGTTTTGCTAGACCTCACGAAAAAGTTAAACATGAACGTATTCATACTGGTGAGAAACCTCATGCTTGTGAgGTATGTGGCAAGACATTTCGCGTGTCTTACTGTTTGACATTACACATGCGAACTCACACCGGAGTTCGTCCTTATGTTTGCCAACACTGTGGCAAGAGGTTTAAAGCATCCTCAGTATACAATCATCACTTGCTCACTCATGGGGAAGAAAGAGCATACACATGTCCGTATTGTCCGAAAACTTTTAAAACTCGAGTTCAACTTGCAGGGCATAAAAATAGCCATACCAAACCATTCAGATGTACCGAATGCTCCAGACCATTTGCCTCGTTATATGCTGCTCGTGCGCATATACAAACGCACAAGAAAGATAATAATCTTAAATTTAGTTGTTTTATTTGTGGAGCTTCGTACGGTAGAGCATTCGCCTTGAAAGATCACTTGAAACAACATGGTCAAGATATATCAGCTCCTCCCGAGCCATCTCGAGAAGAAGAAGTACACGAAGGAGAGAATTTTCTACTTCCTGAAGAGGAAGTAGATGACGATGATCTAGTGATTCCTTCACCATTACCAGTTGCACAATCATCCGAAGCAGAGGAATCTGATTGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSITDNLYCPGCSQRFDSVLALIQHLDHCGQSPESESEVLMEANVEQISESFLATVKDGDIMIVGEPSSIQAGDNEEFNVMEKMDVEERQVNGVTPVPRARESPVPSVVNEADSKSPIPNPLVELTTIEADNQDTDKNLITILSGGPELMDNEDSNLMSHTHSLIADVEEVEDINDPELLHVKQEICEVKLEELEADAMYSCSSCGMSFNSVLEHIKEFHDGQEVVLEMAEPPLENLPTPTSITPPQEPTPVTGSRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRPTSSPAPAKAPMIEKFFSNVEGVKVRDKNLPPGPTRMYRCNQCLEHFAKLGGFRVHVCLRGNNQCNHCDQAFATARALQLHMKVHDSETEGMQRLFVCSTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTHSATFTCPECGKVLSESYRVAHMALHSGGSVTCTICNRKFESADSLAMHAAVHTEPNQSHSPTPPRGEGSESADAQKPYQCQHCGRRFARPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYVCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCFICGASYGRAFALKDHLKQHGQDISAPPEPSREEEVHEGENFLLPEEEVDDDDLVIPSPLPVAQSSEAEESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01413613;
90% Identity: iTF_01048379;
80% Identity: -