Basic Information

Insect: Athalia circularis
Gene Symbol: -
Assembly: GCA_963978495.1
Location: OZ021698.1:7778215-7781214[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.022 2.4 9.3 0.2 3 21 8 27 6 28 0.85

2 14 0.58 62 4.8 0.0 2 20 34 52 33 54 0.91

3 14 0.52 56 4.9 0.3 1 12 225 236 225 245 0.89

4 14 0.036 3.9 8.6 3.2 1 23 353 375 353 375 0.97

5 14 5.5e-06 0.00059 20.6 0.6 2 23 379 400 378 400 0.98

6 14 8.1e-05 0.0087 16.9 2.9 1 23 411 433 411 433 0.98

7 14 0.0058 0.63 11.1 0.1 1 23 452 473 452 473 0.90

8 14 0.00062 0.067 14.1 0.1 2 23 479 500 478 500 0.95

9 14 5.6e-05 0.006 17.4 3.7 1 23 526 548 526 548 0.99

10 14 2e-06 0.00021 22.0 3.7 1 23 554 576 554 576 0.96

11 14 0.00012 0.013 16.4 4.4 1 23 582 604 582 604 0.98

12 14 1.4e-06 0.00015 22.5 0.8 1 23 610 632 610 632 0.98

13 14 8.6e-05 0.0092 16.8 0.2 1 23 636 658 636 658 0.99

14 14 0.00028 0.03 15.2 0.2 1 23 666 688 666 688 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.022	2.4	9.3	0.2	3	21	8	27	6	28	0.85
2	14	0.58	62	4.8	0.0	2	20	34	52	33	54	0.91
3	14	0.52	56	4.9	0.3	1	12	225	236	225	245	0.89
4	14	0.036	3.9	8.6	3.2	1	23	353	375	353	375	0.97
5	14	5.5e-06	0.00059	20.6	0.6	2	23	379	400	378	400	0.98
6	14	8.1e-05	0.0087	16.9	2.9	1	23	411	433	411	433	0.98
7	14	0.0058	0.63	11.1	0.1	1	23	452	473	452	473	0.90
8	14	0.00062	0.067	14.1	0.1	2	23	479	500	478	500	0.95
9	14	5.6e-05	0.006	17.4	3.7	1	23	526	548	526	548	0.99
10	14	2e-06	0.00021	22.0	3.7	1	23	554	576	554	576	0.96
11	14	0.00012	0.013	16.4	4.4	1	23	582	604	582	604	0.98
12	14	1.4e-06	0.00015	22.5	0.8	1	23	610	632	610	632	0.98
13	14	8.6e-05	0.0092	16.8	0.2	1	23	636	658	636	658	0.99
14	14	0.00028	0.03	15.2	0.2	1	23	666	688	666	688	0.98

Sequence Information

Coding Sequence: ATGGGATCATTGAGCCTGGTTTGCCCGATGTGCTGCGGTGAAACTTTTAACAGCCCGCAGTCCTTGAAGTATCATTTATTAAGTATTACTGACAATTTGTATTGTCCGAGTTGCTCGCAACGTTTTGATTCTGTTCTGGCTTTAATTCAACATTTGGATCGATGCGGACAGTCTCCGGAGCCAGAAACAGAAGTTTTTATGgAGGCAAACGTTCAACAAATTAACCATAGTTTCTTGGCTGCTGTTAACAACAAAGATATCATGATCGTTGGAGAGACAAGATCTATTGAAGTTGGTGATGACGGAGAAATAAACGTAATCCGAAAAATGGAGGCTGACGAAGAACAAGCTAGTCCTGAGCCACCTGTATCGGAGGATGAAAGAGATTTTCCAGTTTTGGACGATAATTCGGAACATAAAGCTCCAAGCCCTGAACCATTAGTAGAACTTACCACTATGGATGCTGACCATACCGTGAcagataaaaatatcatcacaATTTTACCTGGGGGTCCGGAACTTCTAGATAATGAAGATAGCAATTTAATGGATGCTCCTCATACTCTTATGGAAAGTGTTGATGATGTTGAGGATCTGAGTGAAGCAAGACTTCTCCAAGTGAAGCAAGAACTCTGCGAGGTAAAACTTGAAGAGtTGGAAGCTGAGGCATTGTATAGCTGTAGTAGTTGTGGAATGAGTTTCAACTCTGTTCTGGAGCATATCAAACAATTCCATGACGGACAAGAAGTTGTCTTAGAGATGGCAGAGCAACAGTTAGACGATTTACCGACACCTGCCTCAGTTAGTCCTCCTGAGGAGCAGACTTCGGTAATATCCAATCGACAACGTCAAATGATGAATACCTTACGAACTGAGGAATGTGTCGACAGCGAAGGTCGATTATATACAAGAAAAGTTGTACAAATAGAAAGGTTTTGGGATCGACCGACAGCTTCGCTTCAACCTGCCAAAGCAccaatgattgaaaaatttttttccaatgtgGAAGGCCTGAAGGTTAGAGACAAGAACTTGCCCACAGGACCTACCCGGATGTACCGATGCAACCAGTGCCTTGAACATTTTGCAAAGTTGGGAGATTTTCGGGTTCACGTCTGTCTCCATGGCAATAATCAATGCAGCCATTGTGACCAAGCATTTGCAACTGCCAGGGCGTTACAACTACATATGAAGGTACACGATAACGAAACTGATGGGATGCAGCGTATGTTTGTCTGTTCTACATGTGGCACCGAGTTCTCGTCTCATAAAAGTCTACGGTTACATTCGCGAATGCATGCACCAGTGAGGGCTAGGCATGTTGACGCTCCCGAAGGCACTCACAGTGCCACCTTCACTTGCCCTGAATGTGGGAAAACTTTATCTGAGTCATACCGAGTAGCACATATGGCTCTGCATTCGGGAGGTTCAGTAACCTGCACAGTCTGCAATCGTAAATTCGATTCCGCGGATAGTTTGGCGATGCATGCGGCAGTACATATGGAACCGAGTCATTCTCACTCACCGACTCCCCCACGAGGTGAAGGCAGTGACAGCGCAGATGCTCAGAAGCCTTATCAATGCCAGCATTGTGGTCGTCGCTTTGCTAGACCCCATGAAAAAGTCAAGCATGAGCGTATACACACCGGTGAAAAACCACATGCCTGTGAAGTATGTGGAAAGACTTTTCGAGTCTCTTACTGTCTGACTTTACACATGCGAACTCACACTGGAGTTCGTCCATACGTCTGTCAGCATTGTGGCAAAAGATTCAAAGCATCTTCTGTGTACAATCACCACCTGCTTACTCATGGAGAAGAAAGAGCATACACATGTCCGTATTGTCCGAAAACTTTTAAGACTCGAGTCCAACTCGCTGGACACAAAAATAGCCACACTAAACCGTTTAGGTGTACTGAATGTTCCAGACCATTTGCCTCATTATATGCAGCACGTGCGCACATACAAACTCATAAGAAAGACAATAATCTTAAATACAGTTGCTATATATGTGGGGCTTCATATGGTAGAGCTTTTGCCTTAAAAGATCATTTGAAACAGCATGGTCAGGATGTGTTAGCCCCTCCTGAACCTGCTAGAGAAGAAGAAGTTCCCGAGGGAGAAGATTTCCTACTCGCCGAAGAGGAAGTTGAGGAAGACGAGCTAGTAATTCCTTCGCCTTTGCCACCCGCTAATTCTTCTGAAGTGGAAGAATCGGATTAG
Protein Sequence: MGSLSLVCPMCCGETFNSPQSLKYHLLSITDNLYCPSCSQRFDSVLALIQHLDRCGQSPEPETEVFMEANVQQINHSFLAAVNNKDIMIVGETRSIEVGDDGEINVIRKMEADEEQASPEPPVSEDERDFPVLDDNSEHKAPSPEPLVELTTMDADHTVTDKNIITILPGGPELLDNEDSNLMDAPHTLMESVDDVEDLSEARLLQVKQELCEVKLEELEAEALYSCSSCGMSFNSVLEHIKQFHDGQEVVLEMAEQQLDDLPTPASVSPPEEQTSVISNRQRQMMNTLRTEECVDSEGRLYTRKVVQIERFWDRPTASLQPAKAPMIEKFFSNVEGLKVRDKNLPTGPTRMYRCNQCLEHFAKLGDFRVHVCLHGNNQCSHCDQAFATARALQLHMKVHDNETDGMQRMFVCSTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTHSATFTCPECGKTLSESYRVAHMALHSGGSVTCTVCNRKFDSADSLAMHAAVHMEPSHSHSPTPPRGEGSDSADAQKPYQCQHCGRRFARPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYVCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKYSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEVPEGEDFLLAEEEVEEDELVIPSPLPPANSSEVEESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01413613;
90% Identity: iTF_00175902;
80% Identity: -