Scon015955.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- wek
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000047.1:13619287-13622509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.66 82 4.6 0.2 2 23 155 177 154 177 0.89 2 15 0.0014 0.17 13.0 0.1 2 23 182 204 181 204 0.94 3 15 0.29 36 5.7 1.0 2 23 403 424 402 424 0.96 4 15 0.44 55 5.1 0.1 2 23 430 452 429 452 0.94 5 15 0.00013 0.016 16.3 0.5 1 20 462 481 462 482 0.95 6 15 1.4e-05 0.0018 19.2 5.4 2 23 493 514 492 514 0.98 7 15 0.00074 0.092 13.9 1.1 1 23 527 549 527 549 0.98 8 15 9.7e-05 0.012 16.6 0.4 1 23 557 580 557 580 0.97 9 15 0.0001 0.013 16.5 2.9 1 23 586 608 586 608 0.94 10 15 0.00028 0.034 15.2 1.6 1 23 611 634 611 634 0.95 11 15 0.016 2 9.6 1.0 1 23 653 675 653 675 0.96 12 15 0.00015 0.019 16.0 2.8 1 23 681 703 681 703 0.98 13 15 1.7e-06 0.00022 22.1 0.7 1 23 708 730 708 730 0.97 14 15 8e-05 0.01 16.9 5.0 1 23 738 760 738 760 0.98 15 15 4.3e-05 0.0053 17.7 0.8 1 23 766 788 766 788 0.98
Sequence Information
- Coding Sequence
- ATGGACGTTGAGGCATTATCGGTCgaaaaagttgGTTCACAACCATCGGAGGAAAATATAGAAGGATTATGTCGACTGTGTGGACAGATTTACGAAAATTCCGTATCAATATTCGACAACAAATTATCCGTTGCTGAAAAAATCAGCAGATGTCTACCAATAATGGTTGTTGCTAATGATGACTTGCCTTCAAAAATCTGTACGCAATGTTTCGCTTATTTAAATGTCAGCTACAAGTTGATAGTGAACTCTATAAAAACGGACACTTTTCtgcgaaaaaaattgcaaaaaagtaACATggctaaaaaaaatgaattgaaggATGAAAAAATCGCAAAGAGTATAAAAACTGAAGAGAGTGAAGACACTGTAAAGAATTCTGAATCTGATTTGATATCAAATGAAGAAGCCACTGTTCTGTCAATAAAgaagttaaagaaaattgcGATTCACGGTCCTGTTACCTGTGAATTCTGCAATCTGGTGTTTGAAGACGTTAATGAATTTGATGAACACTTCGAATCCAATCACATCTTGAAGTGGAAATGTAACTTTTGCGATGGAAGCTTTCAAACGTCTGATGAACTAATTGCCCATAAAGCGATGCTGCATGCTGgaaatataatcatttgtAAGGCTTGCGTCGATGAAGAACTGAATATGGGCccaaaaaatccaaaaattgaagaagatAGTTTCTCTTCTGGCGAGGAACGCGAGGAAAAATTCTACATACCCGCGGAACCTGCGTTACCGCAATCGACAGACTCAGGTTTCAATCCTCCTGATACTCCtccttctattttaaaatcaattcttaATCCTCCAACTGAAATTTCTAGTGAGCAATCCTCTCTAATTCCTACCACTTCGAATTCAAAAGAAGATGAAAGTACTAAGTCTTCAAAGATGTTACCAGCAACTTTAATTGTTTCTCCCGCGTTGACTTCAAAGTTTCTCTTTGGTACAACTAAAGTCgctacaaaaattgtttatggtTCTGCTGGTGAGACTCCTCAACTTGTTTTTACTGAAAACTCTGAAGCTCCACATTCTGTAAACAACAGTGTACTACCCACGCCTTCGCCTAGTACATCTAAATCAGTTAAAAACACTTCTGTTGCCAAGTTAATTAAATCAGTGAGATTGgcgatgaatgaaaaagtggataaaataAGAGCCAGCGAAAGAGCTAAGACTTGCATGTCTTGCGATGTGTGTCACCTTCAAGTAGATGATAAAAAACTCTTTGACCTTCACCAAAAAATCCATTCTCCGAATACTATGGTGTGCGATCTGTGTAAATTGGTATCTCCAACCATTTACGATCTTTATCTTCACAAACGAGAAGTTCACAACCTTTTCACGAAAGTCAATCTCAAATACGTTTGTGACAAATGCGGAAAGTTCTTTTCTAACAGTTGGCAGTGGGAGACACATAAATCTTGCAGATGTAGAAACAGAGAGGGtgaaaataaatgcaaatacTGCGAAGCTTCATTCTCCACGAATCATAAGCTAAAACGACATTTGAGAAAACATAAAGATGAGATGATGAAAGATCCCGAAGTTGAACCATTCAGATGTGTTTCATGTCCTAAAGTTTTCTATGATGAGGAATTTTATCAGAAGCATAGAAACGTTCATGATCCAGAATGCTGGAACAACTTCAAATGCAACGCTTGTGACAGATCTTTTAGAGATGCTGTGAGACTAAAAGAACACGTGAAATCGATACACGAAGGAATAAGGCCACACGCTTGTGATATGTGTGGAAAAACTTTCCACCGTTTGTCTAACATGAAAGTACATCGAGCGTTACATTTTGGTCATAAGTGTACTCACTGTGATCAAGTGTTTGAAAAGGTGCGTCAGTTAGTGGCTCACATTCAAGAGGATCATGGTTTGGAGCCACCAGCTAGCTTGACTGCTAGGAAAGGATATGTGAGCGGAACTTACGTTTGCAGATTTTGTGGAAGGACTTTAGCAACTTACCAATCCTTGCTGGATCATGAGCATATTCATACAGGAGAGAAGCCTTATTCGTGTCATATCTGCGATAAAAGCTTCCgaagCTACACGGCGCGCTGGTCTCATGTGCAAAGACACGAAACGGGAACTTTTATCTGTGAACAATGTGGTAAAAGTTTCAGTTTCAAGCAAAATTTGTTGACACATGTGCAAATTCACGTCTCCATGGAAGAACGAAAACATCAGTGTCAAGTGtgtaagaaaaaattccttcGAAAGGCGCATTTAAATGTTCACATGCGCATTCATGATGGAATTCGTCCCTACACGTGCGACATTTGCAATTTCAGTTTTACGCAAATCGGCGACATGAGAAGACATCGTGCTAGACATGAAAATGGCACTGAAATGCGCAAAAGAAAGCCACGATATAATGCCGAGAACACGGTCTTATCAGAAAATACGTCATGGATTTCTGAAAGCAGCAACGAGGAAACAAActga
- Protein Sequence
- MDVEALSVEKVGSQPSEENIEGLCRLCGQIYENSVSIFDNKLSVAEKISRCLPIMVVANDDLPSKICTQCFAYLNVSYKLIVNSIKTDTFLRKKLQKSNMAKKNELKDEKIAKSIKTEESEDTVKNSESDLISNEEATVLSIKKLKKIAIHGPVTCEFCNLVFEDVNEFDEHFESNHILKWKCNFCDGSFQTSDELIAHKAMLHAGNIIICKACVDEELNMGPKNPKIEEDSFSSGEEREEKFYIPAEPALPQSTDSGFNPPDTPPSILKSILNPPTEISSEQSSLIPTTSNSKEDESTKSSKMLPATLIVSPALTSKFLFGTTKVATKIVYGSAGETPQLVFTENSEAPHSVNNSVLPTPSPSTSKSVKNTSVAKLIKSVRLAMNEKVDKIRASERAKTCMSCDVCHLQVDDKKLFDLHQKIHSPNTMVCDLCKLVSPTIYDLYLHKREVHNLFTKVNLKYVCDKCGKFFSNSWQWETHKSCRCRNREGENKCKYCEASFSTNHKLKRHLRKHKDEMMKDPEVEPFRCVSCPKVFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLKEHVKSIHEGIRPHACDMCGKTFHRLSNMKVHRALHFGHKCTHCDQVFEKVRQLVAHIQEDHGLEPPASLTARKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTGEKPYSCHICDKSFRSYTARWSHVQRHETGTFICEQCGKSFSFKQNLLTHVQIHVSMEERKHQCQVCKKKFLRKAHLNVHMRIHDGIRPYTCDICNFSFTQIGDMRRHRARHENGTEMRKRKPRYNAENTVLSENTSWISESSNEETN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394574; iTF_01393745; iTF_01390547; iTF_01392980; iTF_01391416; iTF_01392221;
- 90% Identity
- -
- 80% Identity
- -