Smag017685.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- wek
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000047.1:2179320-2182857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.7 92 4.6 0.2 2 23 149 171 148 171 0.89 2 15 0.0019 0.26 12.6 0.2 2 23 176 198 175 198 0.94 3 15 0.29 39 5.8 0.8 2 23 397 418 396 418 0.96 4 15 1.9 2.5e+02 3.2 0.1 2 23 424 446 423 446 0.94 5 15 0.00013 0.017 16.3 0.5 1 20 456 475 456 476 0.95 6 15 1.5e-05 0.002 19.2 5.4 2 23 487 508 486 508 0.98 7 15 0.0023 0.3 12.4 1.1 1 23 521 543 521 543 0.98 8 15 0.0001 0.014 16.6 0.4 1 23 551 574 551 574 0.97 9 15 0.00011 0.014 16.6 2.9 1 23 580 602 580 602 0.94 10 15 0.00065 0.085 14.1 2.5 1 23 605 628 605 628 0.95 11 15 0.017 2.3 9.6 1.0 1 23 647 669 647 669 0.96 12 15 0.00016 0.021 16.1 2.8 1 23 675 697 675 697 0.98 13 15 1.2e-06 0.00015 22.8 0.8 1 23 702 724 702 724 0.97 14 15 8.5e-05 0.011 16.9 5.0 1 23 732 754 732 754 0.98 15 15 5.8e-05 0.0076 17.4 0.9 1 23 760 782 760 782 0.98
Sequence Information
- Coding Sequence
- ATGGACGTTGTGGCATTACCGGACGAAAgagttaTTTCACAACCGTTCGAGGAGAATATAGAAGAATTATGTCGACTGTGTGGACAGATTTACGAAAATTCCGTATCCATATTTGACAACAAATTGTCAGTTGCTGAGAAAATCAGCCGATGTCTACCAATAATGGTTGTTGCTAATGATGACTTGCCTTCACATGTCTGCACGCAATGTTTCGCTTACTTAAATGTCAGTTACAAGTTGATAGTGAACTCTATAAAAACGGACACTTTTCtgcgaaaaaaattgcaaaaaaggaaaatggctaagaaaaatgaaacgaAGAGTGAAGAAACCGCAAAGAGTAAAGAAACTGCAAAGAATTCTGAATCTGatttaatatcaaataaaGAAGCCACTGTTGTGCCACTGAAGAAGTTAAAGAAAATTGCGATTCATGGTCCTGTTACTTGTGAGTTCTGCAACCTGGTGTTCGAAGACGTTAATGAATTTGATGAACACTTTGAATCCAATCACATCTTGAAGTGGAAATGTAACTTCTGCGACGGAAGTTTTCAAACGTCTGATGAACTGATTACCCATAAAGCGATGCTGCATGCTGGAAATATAATCATTTGCAAAGCTTGCGTTGATAAAGAAGCGAATATGGGTCGAAAAAAACCGAAAATTGAAGAAGATAGTTTTTCTTCTGGCGAGGAACACGAGGATAAATTCTACATACCCGCGGAACAACCTGCGTTACCTCAATCGACAGAATCAGGTTTCAACCCTCCTGATACtccttctattttaaaatcagcTCTTAATCCTCCTACTGAAATTTCTAGCGATCAATCCTCTGTAACTCCTACCActtcgaattcaaaagaagttCAAAGTAATAAATCTTCAAAGATGTTACCAGCAACTTTGATTGTTTCTCCGGCGTTGACTTCAAAGTTTCTCTATGGTAATACTAAAGCCActccaaaaattgtttttggtTCTCCTAGTGATACTCCTCAACTTATTTTTACCGAAAACTCTGAACCTGTACCTTCTGTAAACAACAGTGTACTACCCACGCCTTCGCCTAGTACATCTAAACCAGCTAAGAACACTTCTGTTGCCAAGTTAATTAAATCAGTGAGATTTGCGATGAAtgaaaaagtggataaaataaGAGCCTTCGAAAGAGCCAAGACTTGCATGTCTTGCGATGTGTGCCACCTTCAAGTAGATGATCAAAAACTCTTTGATCTCCACCAAAAAATCCATTTGCCGAAGACTATGGTGTGCGATCTGTGTAAAGTGGAGTCTCCAACCATTTACGATCTTTATCTTCACAAACGAGAAGCTCACAATCTCTTCACGAAAGTTAATCTCAAATACGTTTGTGACAAGTGTGGAAAGTTCTTTTCTAATAGTTGGCAGTGGGAGACACACAAATCTTGCAGATGTAGAAACAGAGAAGGTgaaaataaatgcaaataCTGCGAAGCTTCCTTCTCCACGAATCATAAGCTAAAACGACATTTGAGGaaACATAAAGATGAGATGATGAAAGATCCCGAAGTTGAACCATTCAGATGTGTTTCAtgtcctaaaattttttatgatgagGAGTTTTATCAGAAGCATAGAAACGTCCACGATCCAGAATGCTGGAATAACTTCAAATGCAACGCTTGTGACAGATCTTTTAGAGATGCTGTGAGACTAAAAGAACACGTGAAATCGATACACGAAGGGATAAAGCCACATGCTTGTGATATGTGTGGCAAAACTTTCCACCGTTTGTCCAACATGaaagtaCATCGAGCGTTACATTTTGGTCATAAGTGTACTCACTGTGATcaagtttttgaaaaggtGCGTCAATTAGTGACTCACATTCAAGAAGATCATGGTTTGGAACCACCAGCTAGCTTGACTGCCAGAAAAGGATATGTGAGCGGAACTTACGTTTGCAGATTTTGTGGAAGGACTTTAGCAACTTACCAGTCCTTGCTGGATCATGAGCATATTCACACTGGAGAGAAGCCTTATTCTTGTCATATCTGCGATAAAAGCTTCCgAAGCTACACGGCGCGTTGGTCTCATGTGCAAAGACACGAAAAGGGAACTTTTATTTGCGAACAATGTGGCAAAAGTTTCAGTTTCAAGCAAAATTTGATGACACATGTGCAAATTCACGTTTCGATGGATGATCGAAAACATCAGTGTCAAGTGTGtaagaaaaaattccttcgaaaGGCGCATTTAAATGTTCACATGCGCATTCACGATGGAATTCGCCCCTTCACGTGCGACATTTGCAATTTCAGTTTCACGCAAGTCGGCGACATGAGAAGACATCGTGCTAGACATGAAAATGGTACTGAAATGCGCAAGAGAGCGCCACGAAATAGAGCCGAAAACACCACGGTCAAATCCGAAAACGCGGCATGGATTTCTGAAAGCAGCAACGACGACACCAActaa
- Protein Sequence
- MDVVALPDERVISQPFEENIEELCRLCGQIYENSVSIFDNKLSVAEKISRCLPIMVVANDDLPSHVCTQCFAYLNVSYKLIVNSIKTDTFLRKKLQKRKMAKKNETKSEETAKSKETAKNSESDLISNKEATVVPLKKLKKIAIHGPVTCEFCNLVFEDVNEFDEHFESNHILKWKCNFCDGSFQTSDELITHKAMLHAGNIIICKACVDKEANMGRKKPKIEEDSFSSGEEHEDKFYIPAEQPALPQSTESGFNPPDTPSILKSALNPPTEISSDQSSVTPTTSNSKEVQSNKSSKMLPATLIVSPALTSKFLYGNTKATPKIVFGSPSDTPQLIFTENSEPVPSVNNSVLPTPSPSTSKPAKNTSVAKLIKSVRFAMNEKVDKIRAFERAKTCMSCDVCHLQVDDQKLFDLHQKIHLPKTMVCDLCKVESPTIYDLYLHKREAHNLFTKVNLKYVCDKCGKFFSNSWQWETHKSCRCRNREGENKCKYCEASFSTNHKLKRHLRKHKDEMMKDPEVEPFRCVSCPKIFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLKEHVKSIHEGIKPHACDMCGKTFHRLSNMKVHRALHFGHKCTHCDQVFEKVRQLVTHIQEDHGLEPPASLTARKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTGEKPYSCHICDKSFRSYTARWSHVQRHEKGTFICEQCGKSFSFKQNLMTHVQIHVSMDDRKHQCQVCKKKFLRKAHLNVHMRIHDGIRPFTCDICNFSFTQVGDMRRHRARHENGTEMRKRAPRNRAENTTVKSENAAWISESSNDDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389672;
- 90% Identity
- iTF_01392980;
- 80% Identity
- -