Sgif004866.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- wek_1
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000088.1:779822-783264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 2.2e+02 3.4 0.1 2 23 143 165 142 165 0.86 2 15 0.014 2 9.8 0.3 2 23 170 192 169 192 0.91 3 15 0.27 38 5.8 0.8 2 23 384 405 383 405 0.96 4 15 0.44 60 5.2 0.1 2 23 411 433 410 433 0.94 5 15 0.00012 0.017 16.3 0.5 1 20 443 462 443 463 0.95 6 15 1.3e-05 0.0018 19.4 5.3 2 23 474 495 473 495 0.98 7 15 0.00073 0.1 13.9 1.1 1 23 508 530 508 530 0.98 8 15 9.6e-05 0.013 16.7 0.4 1 23 538 561 538 561 0.97 9 15 0.0001 0.014 16.6 2.9 1 23 567 589 567 589 0.94 10 15 0.00061 0.084 14.1 2.5 1 23 592 615 592 615 0.95 11 15 0.016 2.2 9.7 1.0 1 23 634 656 634 656 0.96 12 15 0.00015 0.02 16.1 2.8 1 23 662 684 662 684 0.98 13 15 1.1e-06 0.00015 22.8 0.8 1 23 689 711 689 711 0.97 14 15 9.4e-05 0.013 16.7 5.1 1 23 719 741 719 741 0.98 15 15 4.2e-05 0.0059 17.8 0.8 1 23 747 769 747 769 0.98
Sequence Information
- Coding Sequence
- ATGGACGTGGAAGCATTACCGGACGAAAGAGTGGGTTCACAGCCGTTCGAGGAGAATATAGAAGAATTATGTCGACTGTGTGGACAGGTTTACGAAAATTCCGTATCAATATTCGACAACAAATTGTCAGTTGCTGAGAAAATCAGCAGATGTCTACCAATAATTGTTGTTGCCAATGATGACTTGCCTTCACAAGTCTGTACGCAATGTTTTGCTTACTTAAATATCAGCTACAAGTTGATAGTGAACTCTATAAAAACTGACACGTTTCTGCGAAAAAAATTGCAAAAAAATGAAACAAATAGTAAAGAATTTGGAAACAGTAAACAAACTGCAAAGAATTCTGAATCTGATTCAATATCAAATGAAGAAGCCACTGTTGTGCCAATGAAGAAGTTAAAGAAAATTGCGATTCACGGTCCTGTTACCTGTGAGTTCTGCAACCTGGTGTTCGAAGAAGTTGATGAATTTGATGAACACTTCGAATCCAGTCACATTTTGAAGTGGAAATGTAACTTCTGCGACGGAAATTTTCAAACATCTGATGAGCTGATTACACATAAAGCGTTGATGCATGCTGGAAATATAATCATTTGCAAAGCTTGTGTCGATGAGGAAACGAATATGGGCCAGAAAAAACCGAAAATTGAAGAAGACAATTTCTCTTCTGGTGAGGAACGCGAGGATAAATTCTACATACCCGCGGAATCTGCGTTACCTGATACTCCTTCTATTTTAAAATCAGCTCTAAATCCTCCAACTGAAACTTCTAACGATCAATCCTTTGTAGCTTCTACCACTTCAAATTCAAAAGAAGTTGAAAATACTAAATCTTCAAAAATGTTACCAGCAACTTTAATTGTTTCTCCCGCGTTGACTTCAAAGTTTCTCTATGGTACAACCGGTAGTACAACTGAAGGTGCTGCAAAAATTGTTTTTGGTTCTTCTGGTGACACTTCTCAACTTATTTTTTCTGAAAACTCTGAATCTTCACCTTCTATAAACAGCAGTGTACCATCCACGCCTTCGCCTAGTACATCTAAACCAGCTAGGAACACTTCTGTTGCCAAGTTAATTAAAACAGTGAGATTTGCGATGAATGAAAAAGTGGATAGAATAAGAGCCAGCGAAAGAGCTAAGACTTGCATGTCTTGCGATGTGTGCCACCTTCAAGTAGATGATCAAAAACTCTTTGATCTCCACCAAAAAATCCATTCACCGAAGTCTATGGTGTGCGATCTGTGTAAATTGGTGTCTCCAACCATTTACGATCTTTATCTTCACAAACGAGAAGCTCACAATCTTTTCACGAAAATTAATCTCAAATACGTTTGTGACAAATGCGGAAAGTTCTTTTCTAACAGCTGGCAGTGGGAGACACACAAATCTTGCAGATGTAGAAACAGAGAAAGTGAAAATAAATGCAAATACTGCGAAGCTTCATTCTCCACGAGTCATAAGCTAAAACGACATTTAAGGAAACATAAAGACGAGATGATGAAAGATCCCGAAGTTGAACCATTCAGATGTGTTTCATGTCCTAAAGTTTTTTATGATGAAGAATTTTATCAAAAACATAGAAACGTCCACGATCCAGAATGCTGGAACAACTTCAAATGCAACGCTTGTGACAGATCTTTTAGGGATGCTGTGAGACTAAAAGAACACGTGAAATCGATACACGAAGGGATAAAGCCACACGCTTGTGATATGTGTGGCAAAACTTTCCACCGATTGTCCAACATGAAAGTACATCGAGCGTTACATTTTGGTCATAAGTGTACTCACTGTGATCAAGTCTTTGAAAAGGTGCGTCAGTTAGTGACTCACATTCAAGAAGATCATGGTTTGGAGCCACCAGCTAGCTTGACTGCTAGGAAAGGATATGTGAGCGGAACTTACGTTTGCAGATTTTGTGGAAGGACTTTAGCAACCTACCAATCCTTGTTGGATCATGAGCACATTCACACTGGAGAAAAGCCTTATTCTTGTCATATCTGCGATAAAAGCTTCCGAAGCTATACGGCGCGCTGGTCTCATGTGCAAAGACATGAAACGGGAACTTTTATCTGCGAGCAATGTGGCAAAAGTTTCAGTTTCAAGCAAAACTTAATGACGCATGTGCAAATTCACGTCTCGATGGATGATCGAAAACATCAGTGTCAAGTATGTAAGAAAAAATTCCTTCGAAAGGCGCATTTAAATATTCACATGCGCATTCACGATGGAGTTCGTCCCTATACGTGCGACATTTGCAATTTCAGTTTCACGCAAATCGGCGACATGAGAAGACATCGTGCTAGGCATGAAAATGGAACTGAAATGCGTAAGAGAACGCCACGATATAGAGCCGAGAACATGACGGTCAAATCCGAAAACGTGACGTGGATTTCTGAAAGCAGCAACGAGGACACTACCTAA
- Protein Sequence
- MDVEALPDERVGSQPFEENIEELCRLCGQVYENSVSIFDNKLSVAEKISRCLPIIVVANDDLPSQVCTQCFAYLNISYKLIVNSIKTDTFLRKKLQKNETNSKEFGNSKQTAKNSESDSISNEEATVVPMKKLKKIAIHGPVTCEFCNLVFEEVDEFDEHFESSHILKWKCNFCDGNFQTSDELITHKALMHAGNIIICKACVDEETNMGQKKPKIEEDNFSSGEEREDKFYIPAESALPDTPSILKSALNPPTETSNDQSFVASTTSNSKEVENTKSSKMLPATLIVSPALTSKFLYGTTGSTTEGAAKIVFGSSGDTSQLIFSENSESSPSINSSVPSTPSPSTSKPARNTSVAKLIKTVRFAMNEKVDRIRASERAKTCMSCDVCHLQVDDQKLFDLHQKIHSPKSMVCDLCKLVSPTIYDLYLHKREAHNLFTKINLKYVCDKCGKFFSNSWQWETHKSCRCRNRESENKCKYCEASFSTSHKLKRHLRKHKDEMMKDPEVEPFRCVSCPKVFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLKEHVKSIHEGIKPHACDMCGKTFHRLSNMKVHRALHFGHKCTHCDQVFEKVRQLVTHIQEDHGLEPPASLTARKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTGEKPYSCHICDKSFRSYTARWSHVQRHETGTFICEQCGKSFSFKQNLMTHVQIHVSMDDRKHQCQVCKKKFLRKAHLNIHMRIHDGVRPYTCDICNFSFTQIGDMRRHRARHENGTEMRKRTPRYRAENMTVKSENVTWISESSNEDTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389672;
- 90% Identity
- iTF_01394574; iTF_01391416; iTF_01392221;
- 80% Identity
- -