Slae016832.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- wek
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000038.1:11489414-11492798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.39 53 5.3 0.1 2 23 143 165 142 165 0.89 2 15 0.0017 0.23 12.7 0.2 2 23 170 192 169 192 0.94 3 15 0.27 37 5.8 0.8 2 23 390 411 389 411 0.96 4 15 2.8 3.8e+02 2.6 0.1 3 23 418 439 417 439 0.95 5 15 0.00012 0.017 16.3 0.5 1 20 449 468 449 469 0.95 6 15 1.9e-05 0.0026 18.9 6.4 2 23 480 501 479 501 0.98 7 15 0.00072 0.097 13.9 1.1 1 23 514 536 514 536 0.98 8 15 9.4e-05 0.013 16.7 0.4 1 23 544 567 544 567 0.97 9 15 0.0001 0.014 16.6 2.9 1 23 573 595 573 595 0.94 10 15 0.00062 0.085 14.1 2.3 1 23 598 621 598 621 0.95 11 15 0.016 2.1 9.7 1.0 1 23 640 662 640 662 0.96 12 15 0.00014 0.02 16.1 2.8 1 23 668 690 668 690 0.98 13 15 4e-06 0.00054 21.0 0.8 1 23 695 717 695 717 0.97 14 15 7.8e-05 0.011 16.9 5.0 1 23 725 747 725 747 0.98 15 15 5.8e-05 0.0079 17.3 0.9 1 23 753 775 753 775 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTGAGGCATTACCAAACGAAGGAGttaGATCACAGCCGATCGAGGaggatataaaagaaatatgtcGATTGTGTGGACAGATTTGCGAAAATTCCGTATCAATATTCGACAACAAATTGTCAGTTGCTGAGAAAATCAGTAGATGTTTACCaataattGTTGTTGCTAATGATGACCTACCTTCACATGTCTGTACGCAATGTTTTGCTTACTTAAATGTCAGCTACAAGTTGATAGTGAACTCTATAAGAACGGACActtttttgcgaaaaaaattgcaaaaaaataacacGAATAAGacaaatgaaacaaaaagtaaagaaactgtaaagAATTCTGAATCGGATTTGATATCTAGTGAAGAAATCCCTGTTGTGCCAATGAAGAAGTTGAAGAAAGTTGCGATTCACGGTCCGATTACCTGTGAGTTTTGCAACCTGGTGTTCGCAGATGTTAATGAATTTGATGAGCACTTCGAATCCAATCACATCTTGAAGTGGAAATGTAACTTTTGCGACGGAAGTTTTCAAACGTCTGATGAGCTGATTACCCATAAAGCGATGATACATGCTGGAAATATAATCATTTGTAAAGCATGCGTCGATGAAGAAACGAATTTGAGCCAAAAAAAACCGAAAATTGAACAAGATTTCTCTTCTGGTGAGGAACACGAGGATAAATTCTACATACCCGCGGAACCTGCGTTGCCGCAATCGACAGAATCAGGTTTCAATCCTCCTGATACTCcttcttctattttaaaatcagttcTTAACCCTCCAACTGAAATTTCTAGCGATCAATCCTCTGTAACTCCTACCACTTCGAATTCAAAAGAAGTTCAAAGTACAAAATCTTCAAAGATGTTACCAGCAACTTTAATTGTTTCTCCCGCATTGACTTCAAAGTTTCTCTATGGTTCAACTAATGTCACtccaaaaattgtttttggtTCTCCTGGTGAAACTACTCAACTTGTTTTTACTGACAACTCTGAACATCCACCTTCTGTAAACAATAGTGTACCACCCACGCCTTCGTCTAGTACATCTAAACCAGCTAAGAGTCCTTCTGTTGCCAAGTTAATTAAATCAGTGAGATTTGCGATGAatgaaaaagttgataaaataAGAGCCTGCGAAAGAGCCAAGACTTGCATGTCTTGCGATGTGTGCCACCTTCAAGTAGATGATCAAAAACTGTTCGATCTTCACCAAAAAATCCATTCGCCGAAGAATATGTTGTGCGATCTGTGTAAATTGGAGTCTCCAACAATTTACGATCTTTATCTTCACAAACGAGAAGCTCACAATCTCTTAACGAAAGTTAATCTCAAATACGTTTGTGACAAATGCGGAAAGTTCTTCTCTAACAGTTGGCAGTGGGAGACTCACAAATCTTGCAGATGTAAAAACAGAGAAGGcgaaaataaatgcaaatacTGCAAAGCTTCATTCTCCACGAATCATAAGCTAAAACGACATTTGAGGAAACATAAAGATGAAATGATGAACGATCCCGAAGTTGAACCATTCAGATGTGTTTCCTGTCCTAAAGTTTTTTATGATGAGGAATTTTATCAGAAGCATAGAAACGTCCACGATCCAGAATGCTGGAACAACTTTAAATGCAACGCTTGTGACAGATCTTTTAGAGACGCTGTGAGACTAAAAGAGCATGTGAAATCGATACACGAAGGGATAAAGCCACACGCTTGTGATATGTGTGGCAAAACTTTCCACCGTTTGTCCAACATGaaagtaCATCGAGCTTTACATTTTGGCCATAAGTGTACTCACTGTGATCAAGTCTTTGAAAAGGTGCGTCAGTTAGTGAGTCATATTCAAGAAGATCATGGTTTAGAGCCACCAGCTAGTTTGACTTCTAGAAAAGGATATGTGAGCGGAACTTACGTTTGCAGATTTTGTGGAAGGACTTTGGCAACTTACCAGTCCTTGCTGGATCATGAGCATATTCACACTGGAGAGAAGCCGTATTCTTGTCATATATGCGATAAAAGCTTCCgAAGCTACACGGCGCGTTGGTCTCATGTGCAAAGACACGAAAAGGGAACTTTTATTTGCGAACAATGTGGCAAAAATTTTAGTTTTAAGCAAAACTTGATGACACATGTGCAAATTCATGTCTCGATGGATGATCGAAAACATCAGTGTCAAGTgtgtaagaaaaaatttcttcgaaaGGCGCATTTAAATGTTCACATGCGCATTCACGATGGAGTTCGTCCCTTCACGTGCGACATTTGCAATTTCAGTTTCACGCAAATTGGCGACATGAGAAGACACCGTGCTAGACATGAAAATGGTACTGAAATGCGCAAAAGAACGCCGCGAAATAGAGTAGAGAACACGACAGTCAAATCCGAAGAACCGAAATGGGTTTCTGAAAGCAGCAACGAGGACACtaactaa
- Protein Sequence
- MEVEALPNEGVRSQPIEEDIKEICRLCGQICENSVSIFDNKLSVAEKISRCLPIIVVANDDLPSHVCTQCFAYLNVSYKLIVNSIRTDTFLRKKLQKNNTNKTNETKSKETVKNSESDLISSEEIPVVPMKKLKKVAIHGPITCEFCNLVFADVNEFDEHFESNHILKWKCNFCDGSFQTSDELITHKAMIHAGNIIICKACVDEETNLSQKKPKIEQDFSSGEEHEDKFYIPAEPALPQSTESGFNPPDTPSSILKSVLNPPTEISSDQSSVTPTTSNSKEVQSTKSSKMLPATLIVSPALTSKFLYGSTNVTPKIVFGSPGETTQLVFTDNSEHPPSVNNSVPPTPSSSTSKPAKSPSVAKLIKSVRFAMNEKVDKIRACERAKTCMSCDVCHLQVDDQKLFDLHQKIHSPKNMLCDLCKLESPTIYDLYLHKREAHNLLTKVNLKYVCDKCGKFFSNSWQWETHKSCRCKNREGENKCKYCKASFSTNHKLKRHLRKHKDEMMNDPEVEPFRCVSCPKVFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLKEHVKSIHEGIKPHACDMCGKTFHRLSNMKVHRALHFGHKCTHCDQVFEKVRQLVSHIQEDHGLEPPASLTSRKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTGEKPYSCHICDKSFRSYTARWSHVQRHEKGTFICEQCGKNFSFKQNLMTHVQIHVSMDDRKHQCQVCKKKFLRKAHLNVHMRIHDGVRPFTCDICNFSFTQIGDMRRHRARHENGTEMRKRTPRNRVENTTVKSEEPKWVSESSNEDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389672;
- 90% Identity
- iTF_01393745;
- 80% Identity
- -