Smel022686.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- topi_1
- Assembly
- GCA_963583905.1
- Location
- OY757310.1:146554278-146572644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0054 0.76 12.6 2.1 2 21 105 124 104 125 0.94 2 13 2.1e-06 0.0003 23.3 0.4 1 23 150 172 150 172 0.96 3 13 0.023 3.2 10.6 2.0 3 23 180 200 179 200 0.95 4 13 0.16 23 7.9 0.2 2 19 219 236 218 239 0.80 5 13 0.001 0.15 14.8 1.1 2 23 301 322 300 322 0.97 6 13 0.0058 0.83 12.5 3.4 2 22 365 385 364 388 0.88 7 13 0.067 9.5 9.1 0.1 1 23 516 539 516 539 0.97 8 13 0.03 4.3 10.2 0.2 1 23 543 565 543 565 0.97 9 13 1.7e-06 0.00025 23.6 2.4 1 23 571 593 571 593 0.98 10 13 0.14 19 8.2 0.3 1 23 599 624 599 624 0.95 11 13 0.24 33 7.4 3.1 1 23 630 652 630 652 0.86 12 13 6.1e-05 0.0086 18.7 0.3 3 23 660 680 658 680 0.97 13 13 8.3e-06 0.0012 21.4 0.8 1 23 686 709 686 709 0.98
Sequence Information
- Coding Sequence
- ATGAACAATcttgataatataataataaatgtgcACAAAATCACAGAAGATGGAATTGTAGTTTCCTCGGTAAGACATGAAATGGACGTAAATACGAAGGAACTCATCTCCAGAACTTATTTGACTCCAGAAAATGTAAGTTTTAATTATAGTGATGCAGATAAATTGCATTTAAGTTATCACCGTTTCGAATTTGACGAAGAACTTATTAGATGTCTAAAACTAGAAGAGATACAACTTTTACAAGCATCATCAGAATCATCCGAAATGGGAGTGGATAAAAAACCAATACTAAACATACCAACAATGATAAGATGCCAAAATTGTGAGACTAATTTTCCTACAAAATATCAATATCAACGACATCAGTGTGAATTTAATGCCGAGAAAGTAGTATTAAAAGCAGATGCAGATATTAAAGACATTGAAAAAGGTGTTCGAGTTAAATACGTCTGCTCTATTTGCAATAAACAGTTTGTTAGCAAGAATAATTTAGAACGACATCAAGCTGGCCATGAGAATACTCAGGATAATATTTGTGAACACTGCAATAAACAATTTGTTAGCGAAAACAGGCTAAGAATACACAAGGAAAACCATTGTAAAAAATCTGgggatatttcaaaattttacagaagCGATGTTACTGTATGGAAGTGTAAAAAATGCCACGAAGTGTTTTCTTCAACAATTACAGCTAACTACCATGTTGCTATTTGTACGGAAATAGTAGAATTCGATATCATAAACACAGACTCAGAGGAAAGTAAAGAACTGAGTTTTTTACAGGAAGAAATAAAAACTATTGCTTCAATGATGGCAAACGGCGACTCAAGTAAGGAAAAATCTGTTCATATGGATGATAAAAACATCGAGAAAATATTGACAGAAATACTTCTCCAATGCGAATTTTGTAATAGAACCTATGCCgaaaaaaatttgcttttaatGCATCAAAGAAAACATACCACAGCAAAAAATTACGAATGTATTAATTGCAATCTGGTGTTTGATTCGTATGCTATCGCTGCACAACATTGGATGAAAAAATGTTCTGAATACGTAAGTCTCTTTTATTTACCGAAATTAACTTATTGTGAATATTGCGACCGAACTTTTAAGTCTCACGAACTTCTTTATACTCATAagataaaaaagaaacattacACTCCTAAATTGCACATTCCTAACTCGAACGAtcaagaaaagaaagaaaacgaTTGTAAAGATAAGGCTttggataataaacaaatcctTAATAAGTTAATTGAAGATGTATTAAAAACTCTTGATGTTCccgttaacaaaataaataacataactcAGTCCAACCATGACGACtctaataaagaaaatatggaTCCAGAAGGGAATAAGATGATGGatgtaagtaaaataaaaaccGAGTCCCCTGAATTTAGTAGTAGTCAAATTTCTAATGGAGATGTGCCGGAAAAGAAAAAAAGGGGCAGGAAACGCAAGTGGCCTAAAAATCAGTCACTTAAATTGAAAAAGTTTTGTGCTGAAGTCGATGAGGGATTTAAATATCAATGTGAGCGGTGCATTAAAGTCTTTGGTACTATCGTAGACCTTGAGGTACACCGAGAGAAGGAGCATGCAGCTAGTTTCACATGCGAGGAGTGCGGacagATTCTTCATAGTGCCAAAGCCCTTCTGATTCATAGCAGAGCCCACAAGAGTTTAAAGCCGTACGTTTGCGAAACTTGCGGTCGAAGTTACTCCCAAACTTCTCATCTCTGGCAACATATGCGTTTCCATCAAGGAATCAAGCCGTTTGCGTGTCCTCATGAGGGTTGTGAGTCAAGATATACCATTAGACCTGACTTGAAGGATCACATTCGAAAAGTTCATACACGAGAACGCCCTTTCAAGTGTACGGTATGTGATAAATGTTTCCTCACTGGCAGTGTATATTACCAACATCGTTTGATACACACAAACGACAGAAGATACGGATGTGATcTTTGCCCAAAGAGGTTTTTTAGAGCAGACGCCCTAAACAACCACAGGAGAATACATACAGATGAACGTCCCTATCCCTGCCAAGTTTGTGGAAGAGAATTTAGACAAAAAGGTGACCGCAATAAGCACCTTCGTACCCAACATCCTGATGCCATCATAatctaa
- Protein Sequence
- MNNLDNIIINVHKITEDGIVVSSVRHEMDVNTKELISRTYLTPENVSFNYSDADKLHLSYHRFEFDEELIRCLKLEEIQLLQASSESSEMGVDKKPILNIPTMIRCQNCETNFPTKYQYQRHQCEFNAEKVVLKADADIKDIEKGVRVKYVCSICNKQFVSKNNLERHQAGHENTQDNICEHCNKQFVSENRLRIHKENHCKKSGDISKFYRSDVTVWKCKKCHEVFSSTITANYHVAICTEIVEFDIINTDSEESKELSFLQEEIKTIASMMANGDSSKEKSVHMDDKNIEKILTEILLQCEFCNRTYAEKNLLLMHQRKHTTAKNYECINCNLVFDSYAIAAQHWMKKCSEYVSLFYLPKLTYCEYCDRTFKSHELLYTHKIKKKHYTPKLHIPNSNDQEKKENDCKDKALDNKQILNKLIEDVLKTLDVPVNKINNITQSNHDDSNKENMDPEGNKMMDVSKIKTESPEFSSSQISNGDVPEKKKRGRKRKWPKNQSLKLKKFCAEVDEGFKYQCERCIKVFGTIVDLEVHREKEHAASFTCEECGQILHSAKALLIHSRAHKSLKPYVCETCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCESRYTIRPDLKDHIRKVHTRERPFKCTVCDKCFLTGSVYYQHRLIHTNDRRYGCDLCPKRFFRADALNNHRRIHTDERPYPCQVCGREFRQKGDRNKHLRTQHPDAIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310797; iTF_00166313; iTF_00722348; iTF_01013618; iTF_00110810; iTF_01014925; iTF_01227610;
- 90% Identity
- -
- 80% Identity
- -