Basic Information

Insect: Molorchus minor
Gene Symbol: topi
Assembly: GCA_029963825.1
Location: JAPWTJ010001287.1:50397-57114[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0028 0.25 12.6 2.1 2 21 104 123 103 124 0.94

2 14 2e-07 1.8e-05 25.7 0.2 1 23 149 171 149 171 0.97

3 14 0.012 1.1 10.7 2.0 3 23 179 199 178 199 0.95

4 14 0.057 5.2 8.5 0.2 2 19 218 235 217 238 0.84

5 14 0.00054 0.049 14.9 1.1 2 23 303 324 302 324 0.97

6 14 4.9 4.5e+02 2.4 0.1 1 12 330 341 330 343 0.87

7 14 0.003 0.28 12.5 3.4 2 22 367 387 366 390 0.88

8 14 0.033 3.1 9.2 0.1 1 23 487 510 487 510 0.97

9 14 0.016 1.5 10.2 0.0 1 23 514 536 514 536 0.97

10 14 8.9e-07 8.2e-05 23.6 2.4 1 23 542 564 542 564 0.98

11 14 0.026 2.4 9.6 0.2 1 23 570 595 570 595 0.96

12 14 0.12 11 7.5 3.1 1 23 601 623 601 623 0.86

13 14 3.1e-05 0.0029 18.8 0.3 3 23 631 651 629 651 0.97

14 14 4.3e-06 0.00039 21.5 0.8 1 23 657 680 657 680 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0028	0.25	12.6	2.1	2	21	104	123	103	124	0.94
2	14	2e-07	1.8e-05	25.7	0.2	1	23	149	171	149	171	0.97
3	14	0.012	1.1	10.7	2.0	3	23	179	199	178	199	0.95
4	14	0.057	5.2	8.5	0.2	2	19	218	235	217	238	0.84
5	14	0.00054	0.049	14.9	1.1	2	23	303	324	302	324	0.97
6	14	4.9	4.5e+02	2.4	0.1	1	12	330	341	330	343	0.87
7	14	0.003	0.28	12.5	3.4	2	22	367	387	366	390	0.88
8	14	0.033	3.1	9.2	0.1	1	23	487	510	487	510	0.97
9	14	0.016	1.5	10.2	0.0	1	23	514	536	514	536	0.97
10	14	8.9e-07	8.2e-05	23.6	2.4	1	23	542	564	542	564	0.98
11	14	0.026	2.4	9.6	0.2	1	23	570	595	570	595	0.96
12	14	0.12	11	7.5	3.1	1	23	601	623	601	623	0.86
13	14	3.1e-05	0.0029	18.8	0.3	3	23	631	651	629	651	0.97
14	14	4.3e-06	0.00039	21.5	0.8	1	23	657	680	657	680	0.98

Sequence Information

Coding Sequence: atgaacagccttgataatataataataaatgtgcACAAAATTACAGAAGACGGAATTGTGGTTTCATCGGTACGACATGAATTGGACCCAAATACCAAAGAACTTATTTCGAGGACATACTTTACTTCCGATAAcgtaagttttaattttaatagcgATGAAAAAATTCATTTCAATTATGAAAGATTCGAAACTGATGAAGAAATTTTAACGTgcttaaaaatggaaaatgcgGATCTTTCTCAGTCATCAGATACATCTGATACGGGACTAGATAAAAAGccagttttaaatattcctacaaTGATAAGATGCCAGAACTGCGAAACTAATTTTCCGACGAAATATCAATATCAACGTCATCAGTGCGAATTTAATGCAGAAAAAGTTGTGTTGAAACCCGACGCTGacattaaagatatcgaaaaaggCGTACgtgttaaatatatttgtccaaTTTGCGATAAACAGTTTGTTAGCAAAAACAATTTAGAGCGTCATCAAATGGGCCACGAAAGCGTCCAAGAAAATATTTGCGAACATTGTAACAAACAGTTTGTAAGCGAAAATCGGTTAAGAATACACAAGGAAAATCATTGCAAAAAGTCTGGAGATATTTCTAAATTCTACAGGAGTGACGTTACCGTTtggaagtgcaaaaaatgccaCGAAGTATTTTCCTCGACCGTCACAGCCAACTATCACGTCGCAATTTGCACAGAAATAATTGAATTTGATTACCCAGCTAATGCCAACTCAGAAGAAAATAAAGAACTTTCATATCTACAAGAAGAAATAAAGACTATCGCTTCAATTATCAATACAAATGTCGGCGCACATAAAGAAAAATCGACAGCTAATGTGGAAgacaaaaatatcgaaaagaTGTTGACGGAAATCCTTCTCCAATGTGAATTCTGCAATCGAACTTACGCCGAAAAGAACTTGCTTCTGATGCACCAACGGAAACATACCACGGCAAAAAATTACGAATGCCTTAATTGCAATCAGATATTCGATTCTTACGCAATCGCGGCTCAACATTGGATGAAGAAATGCTCCGAATACGTGAGTCTATTTTATCTGCCCAAACTAACATACTGCGAATATTGCGACAGGACCTTCAAGTCCCACGAATTGCTGTACACACATAAGATTAAAAAGAAGCATTACACGCCAAAACTGCACTTGCCCAGCTCTGGCGATCAAGACAGGAGAGAAAACGAATTCTCGGATAAATCTTTGGACAATAAACAAATTCTGAATAGGCTGATAGAGGATGTCCTAAAGACGCTTGATGTCCCagtgaataaaatgaacaatGTCAATTTGTCTAAGAACGACGATAACAGAGAAAATATCGATTCAGCAGTGGGTAGGATAATCGATATTAATAAGATAAAATCTGAAGCTTCAGAAGCTGGTGGCAACCAAGGGGATGTCGATGATGGGTTTAAGTACCAGTGTGAACGATGCATTAAAGTTTTTGGTACCATCGTCGATCTTGAATCTCATCGGGAGAAGGAGCATGCAGCCAGTTTTACTTGTGAGGAGTGTGgccagATCCTCCAGAGTGCCAAAGCTTTACTTATCCACAGCCGTGCCCATAAGAGTCTTAAGCCTTACGTTTGCGAAACTTGCGGACGAAGTTATTCTCAAACTTCGCACCTTTGGCAACACATGCGTTTTCATCAAGGCATAAAACCCTTTGCATGCCCTCACGAAGGTTGCGAGGCTAGATACACGATTAGACCGGATTTGAAGGATCATATCCGCAAGGTGCACACCAGGGAACGTCCTTTTAAATGTACCGTGTGCGACAAATGTTTCCTCACCGGGTCCGTTTATTATCAGCACCGTTTGATACACACTAACGATCGACGATATGGATGCGATCTTTGCCCGAAGCGGTTCTTCAGAGCAGACGCCCTGAACAATCACAGGCGAATCCATACGGACGAACGCCCGTATCCCTGCCAAGTTTGCGGAAGAGAATTCAGACAAAAAGGGGATCGCAACAAGCATCTCAGAACTCAGCATCCCGatgctattattatttag
Protein Sequence: MNSLDNIIINVHKITEDGIVVSSVRHELDPNTKELISRTYFTSDNVSFNFNSDEKIHFNYERFETDEEILTCLKMENADLSQSSDTSDTGLDKKPVLNIPTMIRCQNCETNFPTKYQYQRHQCEFNAEKVVLKPDADIKDIEKGVRVKYICPICDKQFVSKNNLERHQMGHESVQENICEHCNKQFVSENRLRIHKENHCKKSGDISKFYRSDVTVWKCKKCHEVFSSTVTANYHVAICTEIIEFDYPANANSEENKELSYLQEEIKTIASIINTNVGAHKEKSTANVEDKNIEKMLTEILLQCEFCNRTYAEKNLLLMHQRKHTTAKNYECLNCNQIFDSYAIAAQHWMKKCSEYVSLFYLPKLTYCEYCDRTFKSHELLYTHKIKKKHYTPKLHLPSSGDQDRRENEFSDKSLDNKQILNRLIEDVLKTLDVPVNKMNNVNLSKNDDNRENIDSAVGRIIDINKIKSEASEAGGNQGDVDDGFKYQCERCIKVFGTIVDLESHREKEHAASFTCEECGQILQSAKALLIHSRAHKSLKPYVCETCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCTVCDKCFLTGSVYYQHRLIHTNDRRYGCDLCPKRFFRADALNNHRRIHTDERPYPCQVCGREFRQKGDRNKHLRTQHPDAIII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01370124;
90% Identity: -
80% Identity: -