Amos000885.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- topi
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000002.1:7445042-7454719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2e-07 1.7e-05 25.8 0.2 1 23 99 121 99 121 0.98 2 13 0.013 1 10.7 2.0 3 23 129 149 128 149 0.95 3 13 0.077 5.9 8.3 0.2 2 19 168 185 167 188 0.82 4 13 0.00062 0.048 14.9 1.1 2 23 251 272 250 272 0.97 5 13 5.9 4.6e+02 2.4 0.2 1 12 278 289 278 291 0.87 6 13 0.0035 0.27 12.6 3.4 2 22 315 335 314 338 0.88 7 13 0.038 3 9.3 0.1 1 23 468 491 468 491 0.97 8 13 0.15 12 7.4 0.4 1 23 495 517 495 517 0.97 9 13 1e-06 7.9e-05 23.7 2.4 1 23 523 545 523 545 0.98 10 13 0.03 2.3 9.6 0.2 1 23 551 576 551 576 0.96 11 13 0.15 11 7.4 2.9 1 23 582 604 582 604 0.86 12 13 3.6e-05 0.0028 18.8 0.3 3 23 612 632 610 632 0.97 13 13 4.9e-06 0.00038 21.5 0.8 1 23 638 661 638 661 0.98
Sequence Information
- Coding Sequence
- atgaacaatcttgataatataataataaatgtgcACAAGATCACGGAAGATGGAATTGTGGTTTCGTCGATGAGACACGAAATGGACGCGAATACCAAGGAATTTATCTCCAGGAGTTATATTACCTCAGATAACGTAAGTTTTAATTATAGTAACGACgacaaattacatttaaattaccAACGGTTTGATATCGACGAGGAAATTATAACGTGCTTGAAACTAGAGGAATCGCCGCACGTTCAAGCAACAGATCCGTCCGAAATAGGCACGGATAAAGGGGTGCGGGTCAGGTACGTTTGCCCCGTTTGCGATAAACAATTCGTTAGCAAGAACAATCTTGAACGCCATCAGGCCAGCCATGAGAATACGCACGAGAATATTTGCGAGCACTGCAATAAGCAGTTCGTGAGCGAGAACAGGCTCAGAATCCACAAGGAAAACCATTGCAAAAAGTCGGGGGATATATCAAAGTTCTACAGGAGCGACGTTACCGTTTGGAAATGCAAGAAATGCCACGAAGTGTTTTCTTCGACTGTAATGGCCAATTACCACGTCGCAATTTGCACGGAAATAGTCGAATTCGAATGTTCCAACGCCAACTCCGAGGAGAACAAAGAACTCACGTTCCTACAAGACGAGATAAAAAATATCGCCTCTATCATCGTGGACGGTGACGCAAATAAAGAGAAATCTGGCACGCACGCAGAGGATAAAAATATCGAGAAAATGCTGACCGAGATTCTGCTCCAGTGCGAGTTCTGTAACCGTACCTACGCAGAGAAAAACTTGCTGCTCATGCACCAAAGAAAACACACCACGGCGAAGAATTACGAGTGCGTCAATTGCAACCAAATATTCGATTCGTACGCGATCGCGGCCCAGCATTGGATGAAGAAATGCTCGGAGTACGTGAACCTCTTCTACTTACCGAAGCTGACCTACTGCGAATACTGCGATAGAACCTTCAAGTCCCACGAGCTGCTCTACACGCACAAGATCAAGAAGAAGCACTACACGCCCAAGCTGCACCTGCCGAGTTCGGGCGAGACGGAAAAGAAGGAGACCGACGGCGCCGACAAGGCTCTGGACAACAAGCAGATCCTCAACAAGCTGATCGAGGACGTGCTGAAGACGCTCGACGTCCCGGTGAACAAGATGAACGCCGCGGCTGGCCAGCCGTCGAAACAGAGCAGCGACGAGGGTAATGAGGAGAACGTCAGTCCCGAACACAATCGGATGGTGGACGTGACCAAGATAAAGACGGAAGCTCCGGAGCTGGGACATCTGTGCAACGGGGAAACGTCGGAGAAGAAGAGGAGGGGTCGCAAGCGGAAGTGGCCCAAGAACCAGTCGCTCAAGCTGAAGAAATTCTGCGCGGAGGTCGACGACGGTTTCAAGTACCAGTGCGAGCGTTGCATCAAGGTGTTCGGTACCATCGTGGACCTGGAGTCTCACAGGGAGAAGGAGCACGCCGCTAGTTACACGTGCGAAGAGTGTCGACAGATTCTACACAGTGCGAAAGCGCTACTCATCCACAGCCGTGCCCATAAGAGTCTGAAGCCATACGTTTGCGAAACTTGTGGACGCAGCTATTCGCAAACGTCACACTTGTGGCAGCACATGCGATTTCATCAAGGGATAAAGCCTTTCGCGTGCCCCCACGAGGGCTGCGAGGCGAGGTACACCATCAGACCCGACCTGAAGGACCACATACGCAAAGTCCATACCAGGGAGAGGCCCTTCAAATGCTCGGTGTGCGACAAGTGCTTCCTTACCGGCTCGGTGTATTATCAGCACCGTCTGATTCACACCAACGATAGGAGATACGGATGcgatCTTTGCCCGAAGCGATTTTTCAGAGCCGACGCTCTAAACAACCACCGAAGGATTCACACTGATGAGCGTCCCTATCCTTGCCAGGTGTGCGGCAGGGAGTTCAGGCAGAAGGGGGATCGCAACAAGCACCTGAGGACTCAACACCCAGACGCCATCATCATCTAA
- Protein Sequence
- MNNLDNIIINVHKITEDGIVVSSMRHEMDANTKEFISRSYITSDNVSFNYSNDDKLHLNYQRFDIDEEIITCLKLEESPHVQATDPSEIGTDKGVRVRYVCPVCDKQFVSKNNLERHQASHENTHENICEHCNKQFVSENRLRIHKENHCKKSGDISKFYRSDVTVWKCKKCHEVFSSTVMANYHVAICTEIVEFECSNANSEENKELTFLQDEIKNIASIIVDGDANKEKSGTHAEDKNIEKMLTEILLQCEFCNRTYAEKNLLLMHQRKHTTAKNYECVNCNQIFDSYAIAAQHWMKKCSEYVNLFYLPKLTYCEYCDRTFKSHELLYTHKIKKKHYTPKLHLPSSGETEKKETDGADKALDNKQILNKLIEDVLKTLDVPVNKMNAAAGQPSKQSSDEGNEENVSPEHNRMVDVTKIKTEAPELGHLCNGETSEKKRRGRKRKWPKNQSLKLKKFCAEVDDGFKYQCERCIKVFGTIVDLESHREKEHAASYTCEECRQILHSAKALLIHSRAHKSLKPYVCETCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCSVCDKCFLTGSVYYQHRLIHTNDRRYGCDLCPKRFFRADALNNHRRIHTDERPYPCQVCGREFRQKGDRNKHLRTQHPDAIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01370124;
- 90% Identity
- -
- 80% Identity
- -