Scau003813.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- prdm10
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000322.1:40328-43928[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.1e-05 0.0018 18.3 0.3 2 23 466 487 465 487 0.97 2 13 1.4 82 3.7 0.1 2 16 525 539 524 549 0.88 3 13 0.0028 0.17 12.2 0.5 1 23 568 590 568 590 0.92 4 13 0.00024 0.014 15.5 0.9 1 23 601 623 601 623 0.96 5 13 7.3e-05 0.0043 17.1 1.6 1 23 641 663 641 663 0.98 6 13 0.00055 0.033 14.4 0.9 2 23 672 693 671 693 0.97 7 13 0.017 1 9.7 0.7 1 20 700 719 700 722 0.91 8 13 0.0014 0.084 13.1 5.4 1 23 728 751 728 751 0.96 9 13 0.00014 0.0084 16.2 3.9 1 23 756 778 756 778 0.97 10 13 0.00064 0.038 14.2 4.8 1 23 784 807 784 807 0.89 11 13 0.0014 0.082 13.1 1.7 1 23 850 873 850 873 0.97 12 13 0.00017 0.01 16.0 3.9 1 23 895 918 895 918 0.97 13 13 0.0012 0.072 13.3 3.4 3 23 958 979 956 979 0.96
Sequence Information
- Coding Sequence
- atggaTGCTATAGTGGAAGGGCCCCCCGATGAAGGGGCTCAAGATTTAAATCTAATCGATGCCGGACAATGGACTCAAAATggacaaataacaaataattcaacctTTCTTTATATTGCTgtGGAATATGTTAaagatgaatataaaattgatcaaaacaatttaatgaatcataataacgataattatgattttgaacaacaacaacatcaccatcATGTCAGTCCATTAGATCCAAATATGAGTAGTGTAGCACATTATAGTCCAGTTTATAGTGATGCATCAAATGAATTTAATCCAATTGTTATACATCAATTGGTAGAATCTgatgcaacaacaacagcatcaacaacgacaacaacaacacaaaatgatattattaataatctaaCAACACCATTAGTTGAAACAATGCCTGTATTATGTAATAACGATATACGTGATGTTGTAggtaatcagtttttacaaaTGGTAACAActgataatacaacaacaacaaatactaTATCAATtagtaatgatgataataatgataatagatgtattaacaataataataatgaacaagaGAGacaagttgaattattaataacagaTCAAGAAACTGGTATATCATACAGTGTTCGTTCACAAGAATTTTTAGTGGAACGTTGTTTAGATGatgaacaattattgaatgcTCTAACACCTGATCCATTATTGGAATCggatttattaacattagaTGAGAATACATTAAAAACTGAATTGAATGatgatattattaataattcagttATTGATACAACAAAtgtgattaataattatgtaacAAGTTTAACAACACAAGatgatattaaaaatgataatgaaaatccgtataaaatcgaaacaaggcaacataaaaatttagaaattgattttgaagatcaattatTATCGAAAGTTTATAGTATTATTGATAAGCCAATATTATCAAGAGCACGTGCTACATTACCAGAAACATAtcttgtttttaataaaatcgataataatgataatgttggTGTATTTGCTAAAAGAATGATACCGAAACGTACACAATTCGGACCGTTAACTggtatttttacaaatttcaatcaagatCATTTTAAAGAAGATTtaaatagtttaatttttttaattaagaatgaaaatgataatataatcaaCCGTCTAGATGTTTCAGACGAAGATGTTTCAAATTGGATGAGTTTTGTTAGAAAAGCTagtaattttaatgaacaaaATTTAGTTATTAGTCAAGAAGGTAATAGtttatattttacaacaacgaaaaataTCCTTCCAAAAGAGGAATTGaaagttggttattgtttgaattatgcAAATCGTTATAAATTAACTTTATTAAATCCACCAGAAGAACGAACATGGCAATGTTATGAATGTACAGAGAATTTTACAACATCTGAAGAACTACAAAACCATTTGAATAtacatgatgatgataataatattaaagatGAAAATATTAAACCACGtaagaaaatttgtaaaaattcaaaaaagaaattaacattacaacaaaaatcgaataatagtGAAGCATtaaaatgtaataattgtaatgaattatttatacaacCGGCTAAATTGGCATTACGTAATCatttaattgagaaacatTTGATGACACGATTCAATTCAATCGATGAACATTTCTCATTTGTTGCaaattatttcaaatgtgaCAGTTGTGGAGTTGTTTTTAATACAgaaaatctattgaaaattcataattatcaacattatccTGATAATTCTGATGAACAAACTAATCATATTTGTCCGAGTTGTCAACGTAAATTTCCAACACAACGTCAATTAGTGTCACATGTGAATGTACATAATTtggttaataataattcgaagcAACAGTCACAACAACAATCTGAAAGTTTTAAATGTACAGTTTGTCATAAGATTTTCGCTTTACTTGAACGTTTACGTcGTCATATGTTGGTGCATGGTTCTGATGAATCGAAACCATTACAATGTAAAACTTGTAATAAacgttttttgaataattcagcTTTAGCTGGACATTTAAAGACACATTTTGTTggtaaaaaaatattcgaatgtCCGATATGTAAAGAGAGTTTTGATCatgtattaaaattgaaattacatgTACCAAAACattgtgaaaataatttatattcatgtCCGCATTGTACAAAAGTATGTAAAAAGTATAGTATGATAAGGAAGCATATACGTGCATTCCATTGTGATCAAAAACATAATTGTCCACATTGTACGAAAATGTTTCCAACAttagataaattgaaaatgcaTTTATTACGGCATTCAGATCATCGTGAATTTTTATGTTCTGATTGTGGTAAACAATTCAAACGTAAAGATAAATTGAAGGAACATTGTAAACGGATGCATTCAGAAGAACGTGAGAATAATAtaccaaaaattaataataaccatatcaataataataataataataagcaacagtcgaaaaaattgaatccaaAAGTTGAACCAACCGATTTCCATCGATTCATCTATAAATGTCATACCTGTTTGATTGGTTTCAAAAGACGTGGTATGTTAGTGAATCATTTAGCTAAACGTCATCCGGATATACCACCAGATTCAGTACCTGAATTAAATTTACCAATATTACAAACAAcacgtgattattattgtcaacATTGTGATAAAGTATATAAAAGTAGTTCAAAACGTAAAGCAcatatattaaaaaatcatcCTGGTGCTGCATTACCAATGAGTAATCGTAAACATGGTTCATATCaagataattcaaatttaccaaATCCAACATTTTCACAAACAGTTGGTAGTATAACAACACGTCCACAAAATTGTAATTGGTGTCATAAACAATATGCAAGTAaagcgaaattattacaacatcAACGAAAGAAACATAGTGAACAattaacacaacaacaacaagatgaacaaccagaacaacaacaaaatcaagaaatcaatGATATTGACGatcataatttaacaaatgacTATAAAGTAACAGAAGTAAATATTTTGGATAATACTTTAATTAAAGATTACGATAATGGTCATGATAATGATCAATATTGTCATTTAGTGGCGATTGGAACTGGTGATAATTTTACAACTAGCGATTCCCATCTTTACCGACTATTAACAACTAGTAACgGATTGGTGCCGCCACGTTga
- Protein Sequence
- MDAIVEGPPDEGAQDLNLIDAGQWTQNGQITNNSTFLYIAVEYVKDEYKIDQNNLMNHNNDNYDFEQQQHHHHVSPLDPNMSSVAHYSPVYSDASNEFNPIVIHQLVESDATTTASTTTTTTQNDIINNLTTPLVETMPVLCNNDIRDVVGNQFLQMVTTDNTTTTNTISISNDDNNDNRCINNNNNEQERQVELLITDQETGISYSVRSQEFLVERCLDDEQLLNALTPDPLLESDLLTLDENTLKTELNDDIINNSVIDTTNVINNYVTSLTTQDDIKNDNENPYKIETRQHKNLEIDFEDQLLSKVYSIIDKPILSRARATLPETYLVFNKIDNNDNVGVFAKRMIPKRTQFGPLTGIFTNFNQDHFKEDLNSLIFLIKNENDNIINRLDVSDEDVSNWMSFVRKASNFNEQNLVISQEGNSLYFTTTKNILPKEELKVGYCLNYANRYKLTLLNPPEERTWQCYECTENFTTSEELQNHLNIHDDDNNIKDENIKPRKKICKNSKKKLTLQQKSNNSEALKCNNCNELFIQPAKLALRNHLIEKHLMTRFNSIDEHFSFVANYFKCDSCGVVFNTENLLKIHNYQHYPDNSDEQTNHICPSCQRKFPTQRQLVSHVNVHNLVNNNSKQQSQQQSESFKCTVCHKIFALLERLRRHMLVHGSDESKPLQCKTCNKRFLNNSALAGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVCKKYSMIRKHIRAFHCDQKHNCPHCTKMFPTLDKLKMHLLRHSDHREFLCSDCGKQFKRKDKLKEHCKRMHSEERENNIPKINNNHINNNNNNKQQSKKLNPKVEPTDFHRFIYKCHTCLIGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKHGSYQDNSNLPNPTFSQTVGSITTRPQNCNWCHKQYASKAKLLQHQRKKHSEQLTQQQQDEQPEQQQNQEINDIDDHNLTNDYKVTEVNILDNTLIKDYDNGHDNDQYCHLVAIGTGDNFTTSDSHLYRLLTTSNGLVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022469; iTF_00987348; iTF_00929824; iTF_01566477; iTF_00842126; iTF_00814583; iTF_00813892;
- 90% Identity
- -
- 80% Identity
- -