Ipal008598.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- prdm10
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001002.1:19046-24541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8e-06 0.00035 20.6 0.7 2 23 436 457 435 457 0.97 2 13 1.7 74 3.8 0.1 2 16 501 515 500 525 0.88 3 13 0.81 35 4.8 5.7 1 23 544 566 544 566 0.92 4 13 0.00061 0.027 14.6 1.0 1 23 577 599 577 599 0.96 5 13 5.6e-05 0.0024 17.9 2.2 1 23 621 643 621 643 0.98 6 13 0.00071 0.031 14.4 0.9 2 23 652 673 651 673 0.97 7 13 0.022 0.94 9.7 0.7 1 20 680 699 680 702 0.91 8 13 0.0018 0.079 13.1 5.4 1 23 708 731 708 731 0.96 9 13 0.00018 0.0079 16.3 3.9 1 23 736 758 736 758 0.97 10 13 0.0014 0.06 13.5 4.0 1 23 764 787 764 787 0.89 11 13 0.0018 0.078 13.2 1.7 1 23 810 833 810 833 0.97 12 13 0.00022 0.0095 16.0 3.9 1 23 855 878 855 878 0.97 13 13 0.0016 0.068 13.3 3.4 3 23 918 939 916 939 0.96
Sequence Information
- Coding Sequence
- atggatGCAATAGTAGAAGGGCCCCCTGATGAGGGGGCTCCAgatttgaatataattgatGCTGGACAATGGGCACATAATGGACCATTGGCAAACAATTCAACATTTCTATATATTGCtGTAGAATATGTCAAAGATGAATATAAATTGGATCAAAATAATCTAATCCAACAAcataatgattataatgattttgaacaacagcaacaccaccaacaacaacagcaacaacatgTTAGTCCATTAGATCCAAATATGAGTAGTGTAGCACATTATAGTCCAGTTTATAGTGATACATCAAATGAATTCAATCCAATAGTTATACATCAATTATTCTTGCAAATGGTGACAAccgatacaacaacaacagatacaTTATCGATTAGCaacagtgataataataataataataataataatagagaagatgataataataatagtaataatgaggAGGAGAGACAAGTAGAGTTATTGATAACAGATCAAGAAACTGGTATATCGTACAGTGTCCGTTCACAAGAATTTCTAGTAGAACGTTGTTTAGATGatgaacaattattgaatgCATTAACACCAGATCCTTTATTGGAATctgatttattaacattagatGAAAATACGTTAAAAACTGaattaaatgatgatattatcaataattcagtTATTGATACATcaaatgttgttaataacTATATAACaagtttaacaacaacaacaacaactgataatattaaaaatgataacaatgaaagTCAGTATCAGATTGAGACGAGAGGACAAAAGACCCATCAAGAGATTGATTTTGACGatcaattatTATCAAAAGTTTATAGTATAATTGATAAGCCAGTATTATCCAGAGCACGTGCTACATTACCAGAAACATatcttgtttttaataaaatcgatcaaaATAATAGTGATGGTATTGGTGTATTTGCTAAACGTATCATACCAAAACGTACACAATTTGGACCATTAACtggtattttaatgaatttcaatgaaaacgAATTTAAAGAAGATCCAAATACATTAATCTATTTAATTGAGAATGAGAATGATAATACAGTGAATCGTTTAGATGTTTCAGATGAAAATGTTTCGAATTGGATGAGTTTCGTTCGAAAAGctggaaattttaatgaacaaAATCTAGTTATAAGTCAAGAGGGTAATGGTTTGTATTTTACAACAACGAAACATATTGCACCTAAAGAAGAATTAAAAgttggttattgtttaaattatgcAAATCGTTATAAATTAACTGTATTAAGTCCACCAGAAGATCGTACATGGCAATGTTTTGAATGTACCGAGAATTTTACAACGTCCAgtgaattacaaaaacatttaaatatccatgatgattataataatgtaaaagaTGAGAATGTTAAACCGCGAAAAAAGATTTGTAAAAATGCaaagaaaaaactaacaacactatcaatacaacaacaacaacagaaaactAATAATAGTGAAGCATTAAAATGCAACAattgtaatgaattatttatacaacCTGGCAAATTGGCATTACGGAATCATTTGATTGAGAAACATCTAATGACACGATTCAATTCAATTGATGAACATTTCTCATTTGTTGCgaattatttcaaatgtaaTTGTTGTGAAGCTTGTTTTAATActcaagatttattaaaaattcataattatcaacattatccTGATAATTCTGATGAACAAACAAATCATATTTGTCCAAGTTGCCAACGGAAATTTCCAACACAACGTCAATTAGTAACACATGTGTCTGTCCATAATttggttaataataatgataatacgaAACAATCTCAGCAACGACCACAACAGTCGGAAAGTTTCAAATGTACAGTTTGTCATAAGATTTTTGCTTTACGTGAGCGTTTAAGgCGCCACATGTTGGTTCATGGCTCCGATGAATCCAAACCATTACAATGTAAAACGTGCAATAAacgttttttaaataattccgcCTTAGCTGGACATTTGAAAACACATTTCGTTGGTAAAAAAGTGTTTGAATGTCCAATATGTAAAGAGAGTTTCGATCatgtattaaaattgaaattacatgTACCGAAACattgtgaaaataatttatattcatgtCCACATTGTACAAAAGTATGTAAAAAGTATAGTATGATTAGGAAACATATACGTGCATTTCATTGTGATCAAAAACATAATTGTCCACATTGTACAAAGATGTTTCCAACattagataaattgaaaatgcaTCTATTACGACATTCAGATCATCGTGAATTTTTATGTGCTGATTGTGGGAAACAATTTAAACGtaaagataaattaaaagagCATTGTAAACGAATGCATTCAGAAGAACGTGAAAATAATaaattacATCCAAAAGTTGAACCAACAGATTTTCATCGTTTCATCTATAAATGTCATACATGTCTAATTGGTTTTAAACGACGTGGTATGTTGGTAAACCATTTAGCGAAACGTCATCCGGACATACCGCCCGATTCAGTACCTGAATTAAATTTACCAATCTTACAAACAACACGTGACTATTATTGTCAACATTGTGATAAAGTTTATAAAAGTAGTTCGAAACGTAAAGCACacatattgaaaaatcatcCTGGTGCTGCATTACCGATGAGCAATCGTAAACATGGTTCATATCAAGATAATACAAATCTACCAAATCCAACATTTTCACAAACTGTTGGCAGTATAACAACACGTCCACAGAATTGTAATTGGTGTCATAAACAATATGCAAGTAAagcaaaattattacaacaccAAAGAAAGAAACACAGTGAACAACtagcacaacaacaacaaggacaACAACAGCCACAACTACCACAACTAGAACAACATCAAAATCAAGACattgatgatattaatgatCCTGATAATTTAACTGATGAATATAAAATCACAGAAGTTGATATTTTAGACAatagtttaattaaagattACGAAAACAGTCGTGATAACGATCAATATTGTCATTTAGTGGCAATTGAAACAGGTGATAATTTTACAACTAATGATTCACATCTTTACCGTCTATTAACAACTAGTAATGATTTAGTACCGCCACGTtga
- Protein Sequence
- MDAIVEGPPDEGAPDLNIIDAGQWAHNGPLANNSTFLYIAVEYVKDEYKLDQNNLIQQHNDYNDFEQQQHHQQQQQQHVSPLDPNMSSVAHYSPVYSDTSNEFNPIVIHQLFLQMVTTDTTTTDTLSISNSDNNNNNNNNREDDNNNSNNEEERQVELLITDQETGISYSVRSQEFLVERCLDDEQLLNALTPDPLLESDLLTLDENTLKTELNDDIINNSVIDTSNVVNNYITSLTTTTTTDNIKNDNNESQYQIETRGQKTHQEIDFDDQLLSKVYSIIDKPVLSRARATLPETYLVFNKIDQNNSDGIGVFAKRIIPKRTQFGPLTGILMNFNENEFKEDPNTLIYLIENENDNTVNRLDVSDENVSNWMSFVRKAGNFNEQNLVISQEGNGLYFTTTKHIAPKEELKVGYCLNYANRYKLTVLSPPEDRTWQCFECTENFTTSSELQKHLNIHDDYNNVKDENVKPRKKICKNAKKKLTTLSIQQQQQKTNNSEALKCNNCNELFIQPGKLALRNHLIEKHLMTRFNSIDEHFSFVANYFKCNCCEACFNTQDLLKIHNYQHYPDNSDEQTNHICPSCQRKFPTQRQLVTHVSVHNLVNNNDNTKQSQQRPQQSESFKCTVCHKIFALRERLRRHMLVHGSDESKPLQCKTCNKRFLNNSALAGHLKTHFVGKKVFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVCKKYSMIRKHIRAFHCDQKHNCPHCTKMFPTLDKLKMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENNKLHPKVEPTDFHRFIYKCHTCLIGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKHGSYQDNTNLPNPTFSQTVGSITTRPQNCNWCHKQYASKAKLLQHQRKKHSEQLAQQQQGQQQPQLPQLEQHQNQDIDDINDPDNLTDEYKITEVDILDNSLIKDYENSRDNDQYCHLVAIETGDNFTTNDSHLYRLLTTSNDLVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366547;
- 90% Identity
- -
- 80% Identity
- -