Mdia003158.2
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- prdm10
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000015.1:692533-696246[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00053 0.032 14.3 0.3 2 23 476 497 475 497 0.96 2 13 3.9 2.4e+02 2.1 0.1 2 16 541 555 540 565 0.84 3 13 0.0093 0.56 10.4 0.5 1 23 584 606 584 606 0.92 4 13 0.00045 0.027 14.5 1.0 1 23 617 639 617 639 0.96 5 13 2.3e-05 0.0014 18.6 2.2 1 23 656 678 656 678 0.98 6 13 0.00052 0.031 14.3 0.9 2 23 687 708 686 708 0.97 7 13 0.016 0.96 9.7 0.7 1 20 715 734 715 737 0.91 8 13 0.0013 0.081 13.0 5.4 1 23 743 766 743 766 0.96 9 13 0.00013 0.0081 16.2 3.9 1 23 771 793 771 793 0.97 10 13 0.00061 0.037 14.1 4.8 1 23 799 822 799 822 0.89 11 13 0.0013 0.079 13.1 1.7 1 23 868 891 868 891 0.97 12 13 0.00016 0.0096 15.9 3.9 1 23 913 936 913 936 0.97 13 13 0.0011 0.069 13.2 3.4 3 23 976 997 974 997 0.96
Sequence Information
- Coding Sequence
- ATGGATGCGATAGTGGAGGGGCCACCCGATGATGGGGCCCAAGATCTGAATCTAATCGATGCTGGCCAATGGACACAAAATGGACAATTATCAAATAACTCAACATTTCTCTATATTGCTGTAGAATATGTTAAAGATGAGTATAAAATCAATCCAAATAGTTTAATAAATCAACATAATGATAATTATGATTTTGAACAACAACAACAACAACAACAAAATCAACATCATGTCAGTCCTTTAGACCCTAATATGAGTAGTGTAGCACACTACAGTCCAGTTTATAGTGACACATCAAATGAATTTAATCCAATAGTTATACATCAATTAGTCGAATCAGATACAACAAATGGTGCTGTAACAACAACGACAACAACACAAAATGATATTATTAACAATTTAACAACATCATTGGTTGACACAATGCCTGTTTTATGTAATAATGATATACGTGATGTTGTTGGTAATCAATTTCTACAAATGGTAACTGATAGTACATCGACCACGGCAACAAATTCTATATCTATCAGTAATAGTGGTGATAATAATAGTGAGATTAGAGAAAACAATGATAATAATAATAATAATGAGGAACAGAGGCAAGTAGAATTATTGATAACAGATCAAGAAACTGGTATATCATATAGTGTTGTACGTTCACAAGAATTTTTAGTTGAACGTTGTTTAGATGATGAACAATTATTAAATGCATTAACACCAGATCCATTATTAGAAACCGATTTATTAACATTAGATGAAAATACATTAAAAACTGAATTAAATGATGATATTATTAATACATCAGTTATTGATACAACAAATGTTATTGATAATTATGTAACAAATTTAACAGCAGCACAAGCTGATATTAAAATTAATGATAATCAATATAAAATTGAGACAAGAGGACAGAAGAATTTAGAAATTGATTTTGAAGATCAATTGTTATCAAAAGTTTATAGTATTATTGATAAGCCAGTATTATCAAGAGCACGTGCTACATTACCAGAAACATATCTCGCTTTTAATAAAATTGGTAATAATGATAATATTGGTGTATTTGCTAAACGAATGATACCAAAACGTACACAATTTGGGCCATTGACTGGTATTTTAACGAATTTTAATGAAAATGAGTTTACAGAAGATGTGAATAGTTTATGTTTTTTAATTAAAAATGATAATGACAATATAATTAATCGTTTAGATGTCTCAGATGAAAATGTTTCAAATTGGATGAGTTTCGTTAGAAAAGCTATCAATTATAATGAACAAAATGTTGTAATAAGTCAGGAAGGTAATGGTTTATATTTTACAACAACGAAAAATATAACACCTAAAGAGGAATTAAAAGTTGGTTATTGTTTAAATTATGCAAATCGTTATAAATTAACTATATTAAATCCACCAGAAGAACGTACATGGCAATGTTTTGAATGCATAGAAAATTTTACAACATCAGACGAATTACAAAAACATTTAAATGTACACGATGCTGATGGTGATTACAGTGATGATATAAAAGATGAAAATGTTAAACCACGTAGGAAAATTGGTAAAAATTTAAAGAAAAAATTGACATTACAACAAAAAACAAATAATAATAGTAGTGAAGCATTAAAATGTAATAATTGTAATGAATTATTTATACAAACTGGTAAATTAGCATTAAGAAATCATTTAATTGAGAAACATTTAATGACACGTTTTAATTCAATCGATGAACATTTCTCATTTGTTTCGGATTATTTTAAATGTGTTAGTTGTGGTGTTGTATTTAATACAGAAAATTTATTAAAAATTCATAATTATCAACATTATCCTGATAATTCTGATGAACAAACAAATCATATTTGTCCAAGCTGTCAACGTAAATTTCCAACACAACGTCAATTAGTCACACATGTATCTGTACATAATTTAGTTAATAATGGAACACAACAACAATCAGTGAAACAGGAGAGTTTTAAATGTACAATTTGTCACAAGATTTTTGCGTTACGTGAACGTTTACGACGTCATATGTTGGTGCATGGTTCAGATGAATCAAAACCATTACAATGTAAAACGTGTAATAAACGTTTTTTAAATAATTCAGCATTAGCTGGTCATTTAAAAACGCATTTTGTTGGTAAAAAAATATTCGAATGTCCAATTTGTAAAGAGAGTTTTGATCATGTATTAAAATTGAAATTGCACGTACCGAAACATTGTGAAAACAATTTATATTCATGTCCACATTGTACGAAAGTATGTAAAAAGTACAGTATGATAAGGAAACATATACGTGCATTTCATTGTGATCAAAAACATAATTGTCCACATTGTACCAAGATGTTTCCAACATTAGATAAATTAAAAATGCATTTGCTACGACATTCTGATCATCGTGAATTTTTATGTTCTGATTGTGGTAAACAATTTAAACGTAAAGATAAATTAAAAGAGCATTGTAAACGGATGCATTCAGAAGAACGTGAAAATAATATACCAAAAATTATTAATAATAATAACAACAATAGCAATAATAATAATAATAATAAACAACAAATGAAGAAATTAAATCCAAAAGTTGAACCAACCGATTTCCATCGCTTCATATATAAATGTCACACATGTTTGATTGGTTTTAAAAGACGTGGTATGTTAGTAAATCATTTAGCAAAACGTCATCCAGATATACCACCAGATTCTGTACCTGAATTAAATTTACCAATATTACAAACAACACGTGATTATTATTGTCAACATTGTGATAAAGTTTATAAAAGTAGTTCAAAACGTAAAGCGCATATATTAAAAAATCATCCTGGTGCTGCATTACCAATGAGTAATAGAAAACATGGTTCATATACAGATAATTCAAATTTACCAAATCCAACATTTTCACAAACTGTTGGTAGTATCACAACACATCCACAAAATTGTAATTGGTGTCATAAACAATATGCAAGTAAAGCGAAATTATTACAACATCAACGAAAAAAACATTGTGAACAATTAGCACAACAACAACAAGATGAACAACATCAGCAACAGCAACAAGAACAACAACAACATCAACAAAATCAAGAAATAAAAGATATTGATATTGATGAACATAATTTAATCAATGAATATAAAGTAACTGAAGTTAATATATTAGAAAATGCTTTAATTAAAGATTATGAAAATGATGGTGATAATGATCAATATTGTCATTTAGTGGCGATTAGTGCTGGTGATAATTTCACAACAAACGATTCACATCTTTATCGCTTATTAACAACTAGTAATGAAATTCCAGGTTTAGTGCCGCCACGTTGA
- Protein Sequence
- MDAIVEGPPDDGAQDLNLIDAGQWTQNGQLSNNSTFLYIAVEYVKDEYKINPNSLINQHNDNYDFEQQQQQQQNQHHVSPLDPNMSSVAHYSPVYSDTSNEFNPIVIHQLVESDTTNGAVTTTTTTQNDIINNLTTSLVDTMPVLCNNDIRDVVGNQFLQMVTDSTSTTATNSISISNSGDNNSEIRENNDNNNNNEEQRQVELLITDQETGISYSVVRSQEFLVERCLDDEQLLNALTPDPLLETDLLTLDENTLKTELNDDIINTSVIDTTNVIDNYVTNLTAAQADIKINDNQYKIETRGQKNLEIDFEDQLLSKVYSIIDKPVLSRARATLPETYLAFNKIGNNDNIGVFAKRMIPKRTQFGPLTGILTNFNENEFTEDVNSLCFLIKNDNDNIINRLDVSDENVSNWMSFVRKAINYNEQNVVISQEGNGLYFTTTKNITPKEELKVGYCLNYANRYKLTILNPPEERTWQCFECIENFTTSDELQKHLNVHDADGDYSDDIKDENVKPRRKIGKNLKKKLTLQQKTNNNSSEALKCNNCNELFIQTGKLALRNHLIEKHLMTRFNSIDEHFSFVSDYFKCVSCGVVFNTENLLKIHNYQHYPDNSDEQTNHICPSCQRKFPTQRQLVTHVSVHNLVNNGTQQQSVKQESFKCTICHKIFALRERLRRHMLVHGSDESKPLQCKTCNKRFLNNSALAGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVCKKYSMIRKHIRAFHCDQKHNCPHCTKMFPTLDKLKMHLLRHSDHREFLCSDCGKQFKRKDKLKEHCKRMHSEERENNIPKIINNNNNNSNNNNNNKQQMKKLNPKVEPTDFHRFIYKCHTCLIGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKHGSYTDNSNLPNPTFSQTVGSITTHPQNCNWCHKQYASKAKLLQHQRKKHCEQLAQQQQDEQHQQQQQEQQQHQQNQEIKDIDIDEHNLINEYKVTEVNILENALIKDYENDGDNDQYCHLVAISAGDNFTTNDSHLYRLLTTSNEIPGLVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366547;
- 90% Identity
- -
- 80% Identity
- -