Basic Information

Insect: Hycleus cichorii
Gene Symbol: prdm10_1
Assembly: GCA_013841215.1
Location: JACDRQ010000493.1:25251-29812[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.3e-06 0.00029 20.6 0.5 2 23 482 503 481 503 0.97

2 13 1.1 75 3.6 0.1 2 16 547 561 546 571 0.88

3 13 0.0091 0.62 10.2 0.5 1 23 590 612 590 612 0.91

4 13 0.00041 0.028 14.4 1.0 1 23 623 645 623 645 0.96

5 13 2.3e-05 0.0016 18.3 2.9 1 23 669 691 669 691 0.98

6 13 0.00044 0.03 14.3 0.9 2 23 700 721 699 721 0.97

7 13 0.013 0.91 9.6 0.7 1 20 728 747 728 750 0.91

8 13 0.0011 0.077 13.0 5.4 1 23 756 779 756 779 0.96

9 13 0.00011 0.0077 16.2 3.9 1 23 784 806 784 806 0.97

10 13 0.00052 0.035 14.1 4.8 1 23 812 835 812 835 0.89

11 13 0.0011 0.076 13.1 1.7 1 23 876 899 876 899 0.97

12 13 0.00014 0.0092 15.9 3.9 1 23 921 944 921 944 0.97

13 13 0.00097 0.066 13.2 3.4 3 23 984 1005 982 1005 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.3e-06	0.00029	20.6	0.5	2	23	482	503	481	503	0.97
2	13	1.1	75	3.6	0.1	2	16	547	561	546	571	0.88
3	13	0.0091	0.62	10.2	0.5	1	23	590	612	590	612	0.91
4	13	0.00041	0.028	14.4	1.0	1	23	623	645	623	645	0.96
5	13	2.3e-05	0.0016	18.3	2.9	1	23	669	691	669	691	0.98
6	13	0.00044	0.03	14.3	0.9	2	23	700	721	699	721	0.97
7	13	0.013	0.91	9.6	0.7	1	20	728	747	728	750	0.91
8	13	0.0011	0.077	13.0	5.4	1	23	756	779	756	779	0.96
9	13	0.00011	0.0077	16.2	3.9	1	23	784	806	784	806	0.97
10	13	0.00052	0.035	14.1	4.8	1	23	812	835	812	835	0.89
11	13	0.0011	0.076	13.1	1.7	1	23	876	899	876	899	0.97
12	13	0.00014	0.0092	15.9	3.9	1	23	921	944	921	944	0.97
13	13	0.00097	0.066	13.2	3.4	3	23	984	1005	982	1005	0.96

Sequence Information

Coding Sequence: ATGGATGCAATAGTGGAGGAGCCGCCTGATGAGGGGGCTCAAGATTTGAATTTAATCGATGCCGGACAATGGACACAAAACGGACAATTACCGAATAATTCAACATTTCTTTATATCGCAGTAGAATATGTTAAAGATGAATATAAGATCGATCAGAATACTTTAATAAATCAACATAATGATGGTTATGATTTTGAACATCAGCAACAACAACAACAAAACCAACAACATCATCATGTTAGCCCTCTAGATCCGAATATGAGTAGTGTAGCGCATTATAGTCCAGTATATAGTGATACATCAAATGAATTTAATCCAATTGTTATCCATCAATTAGTAGAATCTGATACAACAAATGGTACAGTTGCAACAACACAAAATGATATTATCAACAATTTAACAACATCATTAGTTGAAACAATGCCAGTATTGTGCAATAATGATATACGTGATGTTGTCAATAATCAATTTTTACAAATGGTTACAACTGATAATACACCAACAACAAATTTATCAATCAATAATGGTGATAATACTAGTGATAATCGTGAGAATCATGATAATAACAATAATAATAACATTAATAGTAATAACAATGAGGATCAGAGACAAGTAGAATTGTTGATAACAGACCAAGAAACTGGTATATCATACAGTGTACGTTCACAAGAATTTTTAGTTGAACGTTGTTTAGATGATGAACAATTATTAAATGCTTTAACACCAGATCCACTATTAGAATCGGATTTGTTAACATTAGATGAGAACACTTTAAAAACCGAGTTGAATGATGATATTATTAATACATCTGTGATTGATACTAATAATGTTATTAATAATTATGTAACGAATTTGACAACACCAATAGTACAAGGTGATATTAAAATTGCTGATAATGATAATCAATATAAAATTGAGACAAGACGGCAGAAGAATTTAGAAATCGATTTTGAAGATCAGTTGTTGTCGAAAGTTTATAGTATTATTGATAAGCCGGTATTATCAAGAGCCCGTGCTACATTACCGGAGACATATCTTGTTTTTCATAAAATCGATAATAATGATAATATTGGTGTATTTGCTAAACGAATGATACCAAAACGTACACAATTTGGACCATTAACTGGTACTTTAATAAATTTCGATGAGAATCAATTTAAAGAAGATGTAAATAATTTAATATTTTTAATTGGAAATGATAATGACAGTACAATTAATCGTTTAGATGTATCTGATGAAAATGTTTCAAATTGGATGAGTTTCGTGAGAAAAGCAAAGAATTTTAATGAACAAAATTTGGTAATTAGTCAAGAAGGTAACGGTTTGTATTTTACAACAACGAAAAATATTGCACCTAAAGAGGAATTAAAAGTTGGTTATTGTTTGAATTATGCAAATCGTTATAAATTAACTGTATTGAATCCAGCAGAAGAACGTACATGGCAATGTTTTGAATGTACAGAAACATTTACAACATCAGAAGAATTACAAAAACATCTAAATATACATGATGATAATGATGATAACGGTGATGATAATGGAAAAGATGAGAATATAAAGCCACGTAAAAAAATTAATAAGAATTTTAAAAGAAAATTAACAGCATTACAACAAAAAACTAATAATAATGAAGCTTTAAAGTGCAATAATTGTAATGAATTATTTATACAACCTGCTAAATTAGCATTAAGAAATCATTTAATTGAGAAACATTTAATGACACGTTTCAATTCTATTGATGAATATTTTTCGTCAGTTGCTGATTATTTTAAATGTGATAGTTGTGGTGTTGTTTTTAATACGGATAATTTATTAAGAATTCATAATTATCAACATTATCCTGATAATTCGGATGAACAAACTAATCATATTTGTCCGAGTTGTCAACGTAAATTTCCAACACAACGCCAATTAGTAACGCATGTTTCTATACATAATTTAGTTAATAATGGGGCACAACAACAACAGCAACAACAACAAAAACAACCTGAGAAACAGGAGAGTTTTAAATGTTCGGTTTGTCATAAGATTTTCGCTTTTCGTGAACGTTTACGGCGTCACATGTTGGTGCATGGTTCAGATGAATCGAAACCGTTACAATGTAAAACTTGTAATAAACGTTTTTTAAACAATTCCGCCTTAGCCGGTCATTTAAAGACACATTTTGTTGGTAAGAAAATCTTTGAATGTCCAATATGTAAAGAGAGTTTCGATCATGTATTAAAATTAAAATTACATGTACCGAAACATTGTGAAAATAATTTATATTCATGTCCGCATTGTACAAAAGTATGTAAAAAGTATAGTATGATAAGGAAACATATAAGGGCATTTCATTGTGATCAAAAACATAATTGTCCACATTGTACAAAAATGTTTCCAACATTAGATAAATTAAAAATGCATCTATTACGACATTCTGATCATCGTGAATTTCTATGTTCAGATTGTGGTAAACAATTTAAACGTAAAGATAAATTAAAAGAACATTGTAAAAGGATGCATTCAGAAGAACGTGAAAATAATATACCGAAAATTAATAACAACAATAATAATAATAATAATAAACAACAGGCGAGGAAATTGAATTCAAAAGTTGAACCAACCGATTTCCATCGTTTCATTTATAAATGTCATACGTGTTTGATTGGTTTTAAAAGGCGTGGTATGTTGGTGAATCATTTAGCAAAACGCCATCCAGATATACCACCGGATTCAGTACCTGAATTAAATTTACCAATATTACAAACAACACGTGATTATTATTGTCAACATTGTGATAAAGTATATAAAAGTAGTTCGAAACGTAAAGCACACATATTAAAAAATCATCCAGGTGCTGCATTACCAATGAGTAATCGTAAACACGGTTCATATCCTGATAATACAAATTTACCAAATCCAACATTTTCACAAACTGTTGGTAGTATAACAACACGTCCACAAAATTGTAATTGGTGCCATAAACAATATGCAAGTAAAGCGAAATTATTACAACATCAAAGAAAGAAACATAGTGAACAATTAGCACAACAACAACAACAACATGAACAACAAATACAACAGCAACAACAACATCTAGAACAACAACCACAAGACAATCAAGAAATTAAAGATATTAATGATTTTGATGATCACAATTTAATGAATGAATATAAAGTTACTGAAGTTAATATATTGGATAATACATTAATTAAAGATTATGAACATCGTGATGATCAATATTTAGTGGCGATTGGTACTGGTGATAATTTCACAACAAACGATTCACATCTTTACCGTTTATTAACAACTAGTAACGAAATTTCAGGTTTAGTACCACCGCGTTGA
Protein Sequence: MDAIVEEPPDEGAQDLNLIDAGQWTQNGQLPNNSTFLYIAVEYVKDEYKIDQNTLINQHNDGYDFEHQQQQQQNQQHHHVSPLDPNMSSVAHYSPVYSDTSNEFNPIVIHQLVESDTTNGTVATTQNDIINNLTTSLVETMPVLCNNDIRDVVNNQFLQMVTTDNTPTTNLSINNGDNTSDNRENHDNNNNNNINSNNNEDQRQVELLITDQETGISYSVRSQEFLVERCLDDEQLLNALTPDPLLESDLLTLDENTLKTELNDDIINTSVIDTNNVINNYVTNLTTPIVQGDIKIADNDNQYKIETRRQKNLEIDFEDQLLSKVYSIIDKPVLSRARATLPETYLVFHKIDNNDNIGVFAKRMIPKRTQFGPLTGTLINFDENQFKEDVNNLIFLIGNDNDSTINRLDVSDENVSNWMSFVRKAKNFNEQNLVISQEGNGLYFTTTKNIAPKEELKVGYCLNYANRYKLTVLNPAEERTWQCFECTETFTTSEELQKHLNIHDDNDDNGDDNGKDENIKPRKKINKNFKRKLTALQQKTNNNEALKCNNCNELFIQPAKLALRNHLIEKHLMTRFNSIDEYFSSVADYFKCDSCGVVFNTDNLLRIHNYQHYPDNSDEQTNHICPSCQRKFPTQRQLVTHVSIHNLVNNGAQQQQQQQQKQPEKQESFKCSVCHKIFAFRERLRRHMLVHGSDESKPLQCKTCNKRFLNNSALAGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVCKKYSMIRKHIRAFHCDQKHNCPHCTKMFPTLDKLKMHLLRHSDHREFLCSDCGKQFKRKDKLKEHCKRMHSEERENNIPKINNNNNNNNNKQQARKLNSKVEPTDFHRFIYKCHTCLIGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKHGSYPDNTNLPNPTFSQTVGSITTRPQNCNWCHKQYASKAKLLQHQRKKHSEQLAQQQQQHEQQIQQQQQHLEQQPQDNQEIKDINDFDDHNLMNEYKVTEVNILDNTLIKDYEHRDDQYLVAIGTGDNFTTNDSHLYRLLTTSNEISGLVPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01366547;
90% Identity: iTF_01022469;
80% Identity: -