Zimm002062.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- prdm10
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010000325.1:19990-23693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00017 0.0095 16.1 0.4 2 23 468 489 467 489 0.97 2 13 1.3 76 3.8 0.1 2 16 532 546 531 556 0.89 3 13 0.0019 0.11 12.7 0.5 1 23 575 597 575 597 0.92 4 13 0.00022 0.013 15.7 1.0 1 23 608 630 608 630 0.96 5 13 7.3e-05 0.0042 17.2 1.6 1 23 648 670 648 670 0.98 6 13 0.00011 0.0061 16.7 2.0 1 23 678 700 678 700 0.99 7 13 0.017 0.96 9.8 0.7 1 20 707 726 707 729 0.91 8 13 0.00064 0.037 14.2 6.0 1 23 735 758 735 758 0.96 9 13 0.00023 0.013 15.6 2.9 1 23 763 785 763 785 0.97 10 13 0.00064 0.037 14.2 4.8 1 23 791 814 791 814 0.89 11 13 0.0014 0.079 13.2 1.7 1 23 862 885 862 885 0.97 12 13 0.00039 0.022 14.9 4.0 1 23 907 930 907 930 0.96 13 13 2.5 1.4e+02 2.9 0.1 3 14 970 981 968 984 0.86
Sequence Information
- Coding Sequence
- ATGGATGCTATAGTGGAAGGGCCCCCGGATGATGGGGCTCaagatttaaatttaatcgatGCAGGACAATGGGCCCCAAATGGACAAATGACAAACAATTCAACATTTCTTTATATAGCTgTGGAATATGTTAaagatgaatataaaatagatcaaaataatttaataaatcaacataatgataattatgatttcgaacaacaacagcaacaacatcatcatgtTAGTCCATTAGATCCAAATATGAGTAGTGTAGCACATTATAGTCCAGTATATAGTGATGCTTCAAATGAATTCAATCCAATTGTTATACATCAATTAGTCGAATCAGatgtaaattcaacatcaacatcggtagcaacaacacaaaatgatattattaataatttatcaacaccATTAGTTGAAACAATGCCTGTCTTATGTAATAATGATATACGTGATGTTGttggaaatcaatttttacaaatgGTATCCactgatacaacaacaacaacaaatactatatcaattagtaataataatgataatggtggtattaataatgataataatagtaatgaaaaTGAGAGACAAGTAGAATTGTTGATAACTGATCAAGAAACTGGTATATCGTACAGTGTTCGTTCACAAGAATTTTTAGTCGAGCGTTGTCTAGATgatgaacaattattaaatgcTTTAACGCCAGATCCATTACTAGAATctgatttattaacattagatGAGAATACATTGAAAACTGAATTGaatgatgatattattaataattcagtgATCAATACAACtaatgttattaataattatgtaacGAGTTTAGCAACAACTCAAACTGATATTAAAAACGATGACAATGAAAATCTGTATAAAATCGAAACACGACAACATAAAAATCTGGAAATCAATTTTGAAGAgcaattattatCGAAAGTTTATAGTATTATCGATAAACCAGTATTATCAAGAGCTCGTGCTACATTACCGGAAACCTAccttgttttcaataaaattgataataacgataatattgGTGTATTTGCTAAAAGAATGATAGCAAAGCGTACACAATTTGGTCCGTTAACTGGTAATTTAATGAGTTTTAATCAAAATGATTTCGAAGAAGAtccaaacaatttaatttttctaattagaaatGAAACCGATAATACAATCAATCGTTTAGATGTTTCTGATGAAAATGTTTCAAATTGGATGAGTTTTGTTCGAAAAGCTGTTGATTTCAATGAACAAAATTTAGTTATAAGTCAAGAAGGTAAtagtttatattttacaacaacgaaaaatatACTACCGAAAGAAGAATTAaaagttggttattgtttaaattatgcAAATCGTTATAAATTGACTGTATTGAATCCACCAGAAGATCGTACATGGCAATGTTACGAATGTACCGACAGTTTTACAACATCTgaagaattacaaaaacatttaaatattcatgatgatgataataatataagagaTGAAAATATCAAGCCTCGTAAGAAAATGTttagaaattcgaaaaaaaaactaactaaaatacaacaaaaatctaataataataataataatagtgaagcattaaaatgtaataattgtaatgaattatttatacaaccTGGTAAATTGGCGTTACGTAATCATTTAATTGGGAAACATTTAATGACacgattcaattcaattgacGAACATTTTTCATTAGTCTCaaattatttcaaatgtgaTAATTGTGGAGCGATTTTCAATACAGatagtttattaaaaatcCACAATTATCAACATTGTCCTGATAATTCTGATGAACAAACAAATCATATTTGTCCAAGTTGTCAACGTAAATTCCCAACACAACGACAATTAGTCACTCATGTGAATGTACATAATTTAGttgataatgaaacaaaaaaacaatcgctACAGCAACCTGAAACTTTTAAATGTACAGTTTGTCATAAGATTTTTGCTCTACTTGAACGTTTAAGgcGCCATATGTTGGTTCATGGCTCTGATGAATCGAAACCATTCCAATGTAAAACTTGTAATAAacgttttttaaataattcggCATTAACTGGTCATTTAAAGACACATTTTGTTGGTAAGAAAATATTCGAATGTCCAATATGTAAAGAAAGTTTTGATCatgtattaaaattgaaattgcacGTACCAAAACattgtgaaaataatttatattcatgtCCACATTGTACAAAAGTATGTAAAAAGTATAGTATGATGAGGAAACATATACGTGCATTTCATTGTGATCTAAAACATAGTTGTCCGCATTGTGCAAAAATGTTTCCAACAttggataaattgaaaatgcatttattaaaacattcGGATCATCGTGAATTTCTATGTTCCGATTGTGGTAAACAATTTAAACGTAAAGATAAACTGAAGGAACATTGTAAACGGATGCATTCAGAAGAACGTGAAAATAATataccaaaaattaataataataacaataatcatatcattaatgataataataataataataataaacaaacgaaaaaagtGCATCCAAAAGTTGAACCGACCGATTTCCAccgatttatttacaaatgtcATACATGTTTGATTGGTTTCAAAAGACGTGGTATGTTGGTGAATCATTTAGCAAAACGTCATCCAGATATATCACCAGATTCAGTACCTGAATTAAATTTACCAATATTACAAACAACACGTGATTATTTTTGTCAACATTGTGATAAAGTATATAAAAGTAGTTCAAAACGTAAAGCGCacatattgaaaaatcatcCTGGTGCTGCATTACCAATGAGTAATCGTAAACATGGTTCATATCAAGATAATACAAATTTACCAAATCCAACATTTTCACAAACTGTTGGTAGTATAACAACACGTCCACAAAATTGTAATTGGTGTCATAAACAATATGCAAataatgcTTTAATCAAAgattatgataatgataatgaccAATATTGTCATTTAGTAGCTATAGGAAATGGtgataattttacaacaaatgaTTCTCATCTTTATCGTCTATTAACAACTAGTAACgGTTTAGTGCCGCCACGTTGA
- Protein Sequence
- MDAIVEGPPDDGAQDLNLIDAGQWAPNGQMTNNSTFLYIAVEYVKDEYKIDQNNLINQHNDNYDFEQQQQQHHHVSPLDPNMSSVAHYSPVYSDASNEFNPIVIHQLVESDVNSTSTSVATTQNDIINNLSTPLVETMPVLCNNDIRDVVGNQFLQMVSTDTTTTTNTISISNNNDNGGINNDNNSNENERQVELLITDQETGISYSVRSQEFLVERCLDDEQLLNALTPDPLLESDLLTLDENTLKTELNDDIINNSVINTTNVINNYVTSLATTQTDIKNDDNENLYKIETRQHKNLEINFEEQLLSKVYSIIDKPVLSRARATLPETYLVFNKIDNNDNIGVFAKRMIAKRTQFGPLTGNLMSFNQNDFEEDPNNLIFLIRNETDNTINRLDVSDENVSNWMSFVRKAVDFNEQNLVISQEGNSLYFTTTKNILPKEELKVGYCLNYANRYKLTVLNPPEDRTWQCYECTDSFTTSEELQKHLNIHDDDNNIRDENIKPRKKMFRNSKKKLTKIQQKSNNNNNNSEALKCNNCNELFIQPGKLALRNHLIGKHLMTRFNSIDEHFSLVSNYFKCDNCGAIFNTDSLLKIHNYQHCPDNSDEQTNHICPSCQRKFPTQRQLVTHVNVHNLVDNETKKQSLQQPETFKCTVCHKIFALLERLRRHMLVHGSDESKPFQCKTCNKRFLNNSALTGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVCKKYSMMRKHIRAFHCDLKHSCPHCAKMFPTLDKLKMHLLKHSDHREFLCSDCGKQFKRKDKLKEHCKRMHSEERENNIPKINNNNNNHIINDNNNNNNKQTKKVHPKVEPTDFHRFIYKCHTCLIGFKRRGMLVNHLAKRHPDISPDSVPELNLPILQTTRDYFCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKHGSYQDNTNLPNPTFSQTVGSITTRPQNCNWCHKQYANNALIKDYDNDNDQYCHLVAIGNGDNFTTNDSHLYRLLTTSNGLVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366547;
- 90% Identity
- -
- 80% Identity
- -