Basic Information

Insect: Stegana nigrithorax
Gene Symbol: -
Assembly: GCA_037044495.1
Location: JBAMBQ010005553.1:1032448-1037857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.1e-05 0.0017 18.8 2.1 1 23 215 237 215 237 0.97

2 18 6.8e-06 0.00055 20.3 0.4 1 23 243 265 243 265 0.97

3 18 0.00075 0.06 13.9 0.5 1 23 271 293 271 293 0.95

4 18 1.4e-05 0.0012 19.3 3.1 1 23 299 321 299 321 0.97

5 18 3.3e-05 0.0027 18.2 4.7 1 23 327 349 327 349 0.99

6 18 6e-05 0.0048 17.4 5.7 1 23 355 377 355 377 0.97

7 18 2.9e-07 2.4e-05 24.6 4.3 1 23 383 405 383 405 0.98

8 18 1.1e-07 8.5e-06 26.0 2.4 1 23 411 433 411 433 0.97

9 18 6.2e-05 0.005 17.3 6.7 1 23 439 461 439 461 0.97

10 18 0.00011 0.0086 16.6 6.5 1 23 467 489 467 489 0.98

11 18 9.6e-06 0.00077 19.9 4.5 1 23 495 517 495 517 0.98

12 18 6.9e-06 0.00056 20.3 8.1 1 23 523 545 523 545 0.98

13 18 5.4e-06 0.00043 20.7 7.8 1 23 551 573 551 573 0.97

14 18 6.3e-07 5.1e-05 23.6 7.7 1 23 579 601 579 601 0.98

15 18 1.4e-05 0.0011 19.4 7.0 1 23 607 630 607 630 0.97

16 18 7e-05 0.0056 17.2 0.9 1 23 636 658 636 658 0.98

17 18 0.00074 0.06 13.9 4.4 1 23 668 690 668 690 0.98

18 18 8.7e-06 0.0007 20.0 1.6 1 23 696 719 696 719 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.1e-05	0.0017	18.8	2.1	1	23	215	237	215	237	0.97
2	18	6.8e-06	0.00055	20.3	0.4	1	23	243	265	243	265	0.97
3	18	0.00075	0.06	13.9	0.5	1	23	271	293	271	293	0.95
4	18	1.4e-05	0.0012	19.3	3.1	1	23	299	321	299	321	0.97
5	18	3.3e-05	0.0027	18.2	4.7	1	23	327	349	327	349	0.99
6	18	6e-05	0.0048	17.4	5.7	1	23	355	377	355	377	0.97
7	18	2.9e-07	2.4e-05	24.6	4.3	1	23	383	405	383	405	0.98
8	18	1.1e-07	8.5e-06	26.0	2.4	1	23	411	433	411	433	0.97
9	18	6.2e-05	0.005	17.3	6.7	1	23	439	461	439	461	0.97
10	18	0.00011	0.0086	16.6	6.5	1	23	467	489	467	489	0.98
11	18	9.6e-06	0.00077	19.9	4.5	1	23	495	517	495	517	0.98
12	18	6.9e-06	0.00056	20.3	8.1	1	23	523	545	523	545	0.98
13	18	5.4e-06	0.00043	20.7	7.8	1	23	551	573	551	573	0.97
14	18	6.3e-07	5.1e-05	23.6	7.7	1	23	579	601	579	601	0.98
15	18	1.4e-05	0.0011	19.4	7.0	1	23	607	630	607	630	0.97
16	18	7e-05	0.0056	17.2	0.9	1	23	636	658	636	658	0.98
17	18	0.00074	0.06	13.9	4.4	1	23	668	690	668	690	0.98
18	18	8.7e-06	0.0007	20.0	1.6	1	23	696	719	696	719	0.96

Sequence Information

Coding Sequence: ATGCAACACGTTAGCGCATCAGGCGCCACACCCTCAGTAGTTACGCCTGTGGTCACGACAGGTGGTGGTACAACCATAACACTGGGCGGCCCAGCCTCATCGGTaacgaaaacagaaatcaaGGAAGACGGCAAACCGGCAGCACACAATATTGAAATGTATAAAGTGAATATCGAAGATATATCCCAATTGTTCACGTATCACGAAGTATTTGGCAAAATACATGGAGATGTAGTCGGTCACCCATTAGCGGCGGCACATGGTGGTCAACTGcctccgccgccgccgttgccACCACAAACACATGGCGGCAGTGCCTCGAACGCCgcagctgcagcggcagccacAAATAATGCAGCCGTTGCGGCTGTAATGGCAACAGCgaatgcagctgcagctgctgccgcggcCGCGTCGGCTGCCTCCAATGGCCAGCAACAGCCGCCGGTGACGACGGCCACAACGACGGTGGGCGGCGGGCAGCAAGGCACCGCAACGGTGACAACAACGCAAGGTAATGGCACGCCGACGACGACGGGTGAGTTGCTAATGCCGAAAATGGAAGGGGGCATACCCGGTGTCGATGGCCAGACGACAGCTGTTACATTGGCACCAGATGGCACACCAATTGCCACGGGTACACACGTGTGCGACATTTGTGGCAAAATGTTTCAGTTTCGCTATCAGCTGATCGTGCATCGTCGCTATCACAGTGAACGTAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACAACATCGCAGGATTTAACGCGTCACGGCAAGATACACATTGGCGGACCGATGTTCACTTGCATTGTGTGCTTCAATGTGTTTGCGAATAATGCGAGCCTGGAACGGCATATGAAACGGCATTCAACGGATAAACCATTTGCCTGTACGATTTGTCAGAAGACTTTCGCACGCAAAGAACATTTGGATAATCATTTTCGTTCGCATACGGGCGAGACACCGTTCCGCTGTCAATATTGCGCCAAGACATTCACACGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCTTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGACAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCATCTAGCCAATCACATGCGTTCGCATACCAACGACACACCGTTCCGTTGCGAGATCTGTGGCAAGAGTTTCAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGgcGAGACACCGCATCGTTGTGACTTCTGCTCAAAGACGTTTACGCGCAAGGAACATTTGTTGAATCATGTGCGTCAGCATACCGGTGAATCGCCGCATCGCTGCTCGTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTCAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACCTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACCTATTGCACAAAGACGTTCACGCGCAAGGAACACCTGACGAATCACGTGCGCCAGCACACCGGCGACTCGCCGCATCGTTGCACATACTGCAAGAAGACGTTCACGCGCAAAGAGCACTTGACCAATCATGTGCGCCTGCATACAGGCGACTCGCCGCACAAGTGCGAATATTGTCAAAAGACCTTCACGCGCAAGGAGCATCTGAACAATCATATGCGCCAGCATTCAAGCGATAATCCGCATACGTGCAATGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTCATCAATCACATGTCACGCTGTCATACCGGCGATCGACCCTTCACGTGCGAGACATGCGGCAAATCATTTCCGCTTAAGGGTAATCTGCTCTTCCATCAGCGCAGTCACACCAAGGGACAGGAGTGTGAACGTCCGTTTTCGTGTGAGAAGTGTCCCAagaatttcatatgcaaaGGTCACTTGGTATCGCATATGCGCTCACACTCTGGCGAGAAACCGCATGCGTGCACATTATGCAGCAAAGCCTTTGTTGAACGTGGCAATCTGAAGCGTCATATGAAAATGAATCATCCGGATGCGATGATGCCGCCACCGCCAGTGCACCCACATCCACAGATACCGGCCGGTGTCCTAACCCAAGTGAAACAGGAAGTGAAACCGATTATAATACCACATCAGTCGACAACGATGCACACCATACAACAGATAACCGCCGGAGCTGGCGCTCAAGCTGTACAGCTGACGCCTGGTCTCGTGCCGCTGGTAACGTCGACACTTATCTCGCACAACAATCAgacacaaaagcagcagcaacagcaacaacagcagcaacagcaacaacagcagcagcagcaacaacagcaacagcagcaacaacaacagcagcagcaggcacatcagcaacatcaacaacatgttgcgcagcagcaacaacaggcagccgcagcagctgcggcagctgcagcacatcaacagcaacaacagcaattgcaacagcagcaacaattgctacAGCTCTCAATACAACAGGCagcacatcatcatcagcaacaacagcagcagcagcagcagcaacaacaggagcaacatcgtcagcatcagcatcaccaggcggcacagcaacagcaggcgcATCCGCAAgcaccaccgccgccacagcaacaacaacaacaaccaccaccaCAAGTGCCCATCGCACTAATTAGCGATCCAGGAGTTCTAGCACGCGCCGCCATGCAGCTGCAACACTTGCCAGCCAATGTTGAGCAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSASGATPSVVTPVVTTGGGTTITLGGPASSVTKTEIKEDGKPAAHNIEMYKVNIEDISQLFTYHEVFGKIHGDVVGHPLAAAHGGQLPPPPPLPPQTHGGSASNAAAAAAATNNAAVAAVMATANAAAAAAAAASAASNGQQQPPVTTATTTVGGGQQGTATVTTTQGNGTPTTTGELLMPKMEGGIPGVDGQTTAVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCTYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHTCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHQSTTMHTIQQITAGAGAQAVQLTPGLVPLVTSTLISHNNQTQKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAHQQHQQHVAQQQQQAAAAAAAAAAHQQQQQQLQQQQQLLQLSIQQAAHHHQQQQQQQQQQQQEQHRQHQHHQAAQQQQAHPQAPPPPQQQQQQPPPQVPIALISDPGVLARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00061319; iTF_00062155; iTF_00891153; iTF_00890290; iTF_01195443; iTF_00251497; iTF_01196137;
80% Identity: -