Basic Information

Insect: Amiota communis
Gene Symbol: -
Assembly: GCA_037043315.1
Location: JBAMAV010000439.1:27260-33539[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.5e-05 0.0029 18.8 2.1 1 23 213 235 213 235 0.97

2 18 8.2e-06 0.00097 20.3 0.4 1 23 241 263 241 263 0.97

3 18 0.00089 0.11 13.9 0.5 1 23 269 291 269 291 0.95

4 18 1.7e-05 0.002 19.3 3.1 1 23 297 319 297 319 0.97

5 18 3.9e-05 0.0047 18.2 4.7 1 23 325 347 325 347 0.99

6 18 7.2e-05 0.0085 17.3 5.7 1 23 353 375 353 375 0.97

7 18 3.5e-07 4.2e-05 24.6 4.3 1 23 381 403 381 403 0.98

8 18 1.3e-07 1.5e-05 26.0 2.4 1 23 409 431 409 431 0.97

9 18 7.3e-05 0.0087 17.3 6.7 1 23 437 459 437 459 0.97

10 18 0.00013 0.015 16.5 6.5 1 23 465 487 465 487 0.98

11 18 1.1e-05 0.0014 19.8 4.5 1 23 493 515 493 515 0.98

12 18 8.3e-06 0.00098 20.3 8.1 1 23 521 543 521 543 0.98

13 18 6.4e-06 0.00076 20.6 7.8 1 23 549 571 549 571 0.97

14 18 7.5e-07 8.9e-05 23.6 7.7 1 23 577 599 577 599 0.98

15 18 4.2e-05 0.005 18.1 6.9 1 23 605 628 605 628 0.97

16 18 2.9e-05 0.0035 18.6 0.8 1 23 634 656 634 656 0.98

17 18 0.00089 0.11 13.9 4.4 1 23 666 688 666 688 0.98

18 18 1e-05 0.0012 20.0 1.6 1 23 694 717 694 717 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.5e-05	0.0029	18.8	2.1	1	23	213	235	213	235	0.97
2	18	8.2e-06	0.00097	20.3	0.4	1	23	241	263	241	263	0.97
3	18	0.00089	0.11	13.9	0.5	1	23	269	291	269	291	0.95
4	18	1.7e-05	0.002	19.3	3.1	1	23	297	319	297	319	0.97
5	18	3.9e-05	0.0047	18.2	4.7	1	23	325	347	325	347	0.99
6	18	7.2e-05	0.0085	17.3	5.7	1	23	353	375	353	375	0.97
7	18	3.5e-07	4.2e-05	24.6	4.3	1	23	381	403	381	403	0.98
8	18	1.3e-07	1.5e-05	26.0	2.4	1	23	409	431	409	431	0.97
9	18	7.3e-05	0.0087	17.3	6.7	1	23	437	459	437	459	0.97
10	18	0.00013	0.015	16.5	6.5	1	23	465	487	465	487	0.98
11	18	1.1e-05	0.0014	19.8	4.5	1	23	493	515	493	515	0.98
12	18	8.3e-06	0.00098	20.3	8.1	1	23	521	543	521	543	0.98
13	18	6.4e-06	0.00076	20.6	7.8	1	23	549	571	549	571	0.97
14	18	7.5e-07	8.9e-05	23.6	7.7	1	23	577	599	577	599	0.98
15	18	4.2e-05	0.005	18.1	6.9	1	23	605	628	605	628	0.97
16	18	2.9e-05	0.0035	18.6	0.8	1	23	634	656	634	656	0.98
17	18	0.00089	0.11	13.9	4.4	1	23	666	688	666	688	0.98
18	18	1e-05	0.0012	20.0	1.6	1	23	694	717	694	717	0.96

Sequence Information

Coding Sequence: atgCAACACGTTAGCGCTTCAAGCGCAACACCATCTGTTGTGACACCGGTTGTCACGACAGGTGGAACAACCATAACACTTGGTGGGCCACCACCACTTCCAACAAAAACGGAAATTAAAGATGACACAAAACCGCCAGCCCACGGCATTGAAATGTATAAAGTGAACATTGAAGATATTTCACAATTGTTCACATATCACGAAGTATTTGGTAAAATACATGGTGATGTTGTCAGTCATCCATTGGCGGCACATGGTGGCCAATtgccaccaccgccaccattACCACCACAAGGTGGTCATGTAAGTGCAACAAATGCTGCTGttgcagcggcagcagcaacTACGAATAATGCAGCTGTAGCAGCAGTTATGGCATCAGcaaatgcagcagcagcagctgccgCCGCAGCATCTGCTGCGGCAAATAATGGACAAACACCagttacaacagcaacaacaacaggtgGGCaattaacaacagcaacaacggtAACAACAGCCGGCGCAAGTGGGACACCAACAACAACGGGTGAGTTGTTAATGCCCAAAATGGAAGGTGGCCTCCAAGGTGTCGATGGTACTCAAACAGCAGTGACACTAGCCCCCGATGGTACGCCAATAGCAACGGGTACTCATGTGTGCGATATTTGCGGCAAAATGTTCCAGTTTCGTTATCAATTGATTGTGCATCGTCGTTACCACAGCGAACGTAAACCATTTATGTGTCAGGTATGCGGTCAAGGATTCACAACATCACAGGATTTGACACGTCACGGTAAAATACATATTGGTGGACCGATGTTTACATGCATTGTGTGCTTCAATGTATTCGCCAATAATGCCAGTTTGGAACGTCACATGAAGCGGCATTCAACCGATAAACCATTCGCCTGTACGATTTGTCAGAAGACTTTTGCACGCAAAGAACATTTGGATAATCATTTCCGTTCGCATACGGGCGAGACACCGTTCCGTTGTCAATATTGCGCCAAGACATTTACACGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACCCCACATCGTTGCGATATTTGTAAGAAGTCTTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGACAAACACCGCATCAGTGCGATGTCTGTGGCAAGAAATATACACGCAAGGAGCATCTAGCAAATCATATGCGTTCGCACACCAACGACACACCGTTCCGTTGTGAGATCTGTGGCAAGAGTTTCAGCCGCAAGGAGCACTTCACCAATCATATACTTTGGCATACagGGGAGACACCTCATCGTTGCGATTTCTGTTCAAAGACGTTTACACGCAAGGAGCATTTGTTGAATCATGTACGCCAGCACACTGGAGAGTCACCACATCGTTGCTCATACTGCATGAAGACGTTCACACGCAAGGAGCACCTGGTCAATCATATACGGCAGCACACGGGTGAGACACCGTTCAAGTGCACCTACTGCACGAAAGCGTTTACTCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACTTACTGCACAAAGACGTTCACACGCAAGGAGCATCTGACGAATCATGTCCGTCAACATACTGGTGATTCACCGCATCGCTGCACCTACTGCAAGAAGACATTCACACGGAAGGAACACTTGACCAACCATGTCCGCTTGCATACGGGAGACTCACCACATAAATGCGAATATTGTCAGAAGACTTTCACCCGAAAGGAGCATCTCAACAATCATATGCGTCAACATTCAAGCGATAATCCGCATACATGCAATGTTTGTAGTAAACCATTTACTCGAAAGGAGCATCTTATCAATCATATGTCACGTTGTCATACTGGCGATCGTCCCTTCACCTGTGAGACATGCGGAAAATCGTTCCCGCTCAAGGGTAATCTCCTCTTCCATATGCGTAGCCATACCAAGGGACAAGAATGCGAAAGACCATTTTCATGTGAAAAATGTCCGAAAAATTTCATATGCAAAGGTCACTTGGTATCCCATATGCGTTCCCATTCTGGTGAGAAACCACATGCTTGTACTCTATGTAGCAAAGCATTTGTTGAGCGCGGCAATTTGAAGCGTCACATGAAAATGAATCATCCGGATGCCATgatgccaccaccaccaatacATCCACATCCGCAAATACCGGCTGGTGTTCTAGCACAAGTGAAACAAGAAGTCAAACCGATTATAATCCCCCATCAAACAGCAACCATGCACACCATACAACAGATTACAGCTGGAGCTGGAGCTCAAGCAGTGCAATTGACACCGGGTTTAGTGCCGTTGGTGACTTCAACACTTATTTCGCACAATAATCAAacacaaaagcagcagcaacaacaacaacaacagcagcaagtacagcaacagcagcagcaacaacaacaacagcagcaacaacaacagcagcaacagcagcagcagcaacaacaacaacagcagcagcaacagcaacaagcccatcagcaacatcaacaacatgttgtgcaacaacaacagcagcagcaacaacaacagcaagcggctgcagcagcagctgccgCAGCGGCAgctcatcaacaacaacagcaacagttgcaacaacagcagcaacaattgtTACAACTTTCAATACAACAGGcagctcatcatcatcagcagcaacaacaacaacagcagcagcagcagcaacaacaacaagagcaacatcgtcaacatcaacaacatcatcaggcagcacaacagcaacatccaCAAGCGCCGCCACcacctcaacaacaacaacaacagcctcCACCACAAGTCCCCATTGCATTGATAAGTGATCCAAGTGCATTGGCACGAGCAGCAATGCAATTGCAACATTTGCCTGCGAATGTTGAACAACATCCAGTGGTTTACTAA
Protein Sequence: MQHVSASSATPSVVTPVVTTGGTTITLGGPPPLPTKTEIKDDTKPPAHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVSHPLAAHGGQLPPPPPLPPQGGHVSATNAAVAAAAATTNNAAVAAVMASANAAAAAAAAASAAANNGQTPVTTATTTGGQLTTATTVTTAGASGTPTTTGELLMPKMEGGLQGVDGTQTAVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCTYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHTCNVCSKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHMRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPIHPHPQIPAGVLAQVKQEVKPIIIPHQTATMHTIQQITAGAGAQAVQLTPGLVPLVTSTLISHNNQTQKQQQQQQQQQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAHQQHQQHVVQQQQQQQQQQQAAAAAAAAAAAHQQQQQQLQQQQQQLLQLSIQQAAHHHQQQQQQQQQQQQQQQEQHRQHQQHHQAAQQQHPQAPPPPQQQQQQPPPQVPIALISDPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_01364076;
80% Identity: -