Rchl001555.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000005.1:4840103-4843054[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.6 1.9e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 19 1.7 2e+04 -3.3 2.8 4 10 161 167 158 167 0.86 3 19 2.8e-07 0.0033 18.4 17.0 1 19 175 192 175 192 0.99 4 19 7.2e-09 8.5e-05 23.4 16.2 1 19 228 247 228 247 0.95 5 19 2.2 2.6e+04 -3.7 1.1 10 14 254 258 252 258 0.71 6 19 2.6 3e+04 -3.9 1.3 6 10 272 276 271 276 0.77 7 19 0.16 1.9e+03 -0.1 9.4 3 18 284 300 282 301 0.88 8 19 1.2e-05 0.14 13.2 9.8 1 18 336 353 336 354 0.97 9 19 0.39 4.6e+03 -1.3 0.2 1 5 363 367 363 369 0.95 10 19 0.0051 60 4.7 8.0 1 12 388 399 388 399 0.94 11 19 0.062 7.3e+02 1.3 1.0 4 10 407 413 406 413 0.97 12 19 1.3e-07 0.0015 19.4 14.6 1 19 419 437 419 437 0.93 13 19 0.0002 2.3 9.2 8.5 9 19 485 495 483 495 0.90 14 19 0.0047 55 4.9 5.6 1 12 505 515 505 515 0.95 15 19 1.8 2.1e+04 -3.4 6.7 14 19 544 549 544 549 0.90 16 19 0.00044 5.2 8.1 2.5 1 11 585 595 579 596 0.90 17 19 0.00054 6.4 7.8 13.8 3 19 625 641 624 641 0.91 18 19 1.4e-05 0.17 12.9 12.3 1 16 686 700 686 706 0.89 19 19 1.1 1.3e+04 -2.7 0.4 5 10 735 740 735 740 0.92
Sequence Information
- Coding Sequence
- ATGAGGAAATTCAAGAGAGCCCAGGCTCAGAATCAAGCGGCGATCGAAAGGCACATGGAAACATATCCATTGGTCGAATCGTCCAGCGACGAAGAGGATGAAACTGGGCAAGAAATGTTGGAAAAAGCTGTGGGCAAAGTCCTAACTTCTTACCAAGATCAGGGAGGAGATTCTGAAAAGATTCTCTCTTATTTAGAAGATACTTTTCAATCCAACGGAGCAGTTTGCCTAATATGTATCTCATCGGTCAAGAAAACAGACTCTATATGGAGCTGCGGCAGATGCTATTCCTTCATGCATCTACCCTGCATTCAACACTGGATTCGAGACAGTTTAACTTACAAACGAGATCGAGGAATTTCACAATTTTGGGCATGTCCAAAATGTCGTACGGAATACGAGGAAGCGGAGGCTCCAAAAGACTACGAATGTTTTTGCGGCAAGACTAGAGATCCGCCCTACCAACCATGGTGTGTTCCGCACTCCTGCGGAGAAGCTTGCGGAAAGGATCTTCAACCGAAATGCGGTCATTCGTGTGTCCTGCTTTGTCATCCGGGTCCTTGTCCCCCATGCCCCAAGATGGTTACCTCAAAATGCTACTGTTGCAAACAGTCGCCAAAAGCGAGACGCTGTAACGCGAAAGAGTGGAGCTGCGGTGAAATTTGCGGTAAAGATTTGAACTGCGGGAAGAAACACACTTGCAAAGAGACTTGTCATTCCGGAGACTGTCCCCCCTGTCCGGAAAAGATATCTGCTTCTTGTCACTGCGGGAATAAAACTGAGATGAAATCCTGCTCAGATTCAATCTGGCAGTGCGATAAACCTTGCAGAAAGCTTCTATCCTGCAAAGTTCATGTCTGCCAGGGCGTTTGCCATCTGCCAAACGACTGCGGAGATTGTTTGACCGCTAGGAACAGAACTTGTCCATGCGGAAAGAGAAGATACAAAATTTCTTGCGAGCAGGAAGCGTCGACTTGCGGAGATACTTGCGGGAAATTACTGGACTGCGGATCGCACTATTGCAACAAGCGTTGCCATGCTGACAGCTGCGGTCAATGCTTGGAAGTCGTTACTAAATCTTGTAAATGCGGTTCCCACAAGAAGGAGATAGCTTGCGCCAAGGTGTTTCACTGCGAGATTAAATGCAAGCAGATTAGACTCTGCGGCAGACATCCGTGCAACAAGAAATGCTGTGATTGTGTGAAAAAGAACAATTTTCACGCCTGCGAAAAAACCTGCGATAGGACTCTGAGCTGCCGTAAACACAAATGCTCTGCTCCTTGCCACAGCGGTCCTTGCTATCCGTGTCCAAGGACTGATACAATACAGTGTCGCTGCGGATCGAGTAAGATTGTCATTCCCTGCGGTACAGCGAAGAAGATAAAGCCTCCTCACTGCAATAAGATGTGCAAAATACCCCCGATTTGTCACCATCCAAAAAGAGAGTCTCACAAATGTCATCAGGGGCAGTGTCCACCTTGTAGAAAACAATGCGCTTTAACGCACAAGAAATGTGGCCACATTTGTCCTGCGCCTTGTCATACCAAGGTCTGGGTTAAAGTTAACGGCATTACTCAACCCGCAGGGCCGTGGGAGAAGCAGAAGGATAAAATGCAGCTGAAAACTCTGCCTTGTCCGCCATGCCAAGTCTCAGTTATGGTCACCTGCTTGGGTGGACATGAGACTTTGCCCTGGCCTTGCCATAGAGCTGTATCGAGCTCTTGTCAGAGAGAGTGTGGCCGGGTTTTAGACTGCACTAATCATAGCTGCACGTTTTTATGCCATGTTGTTAAAGCCGCGGGAGATACGGGGGACGCTACTGTCTGCGAGGAGTGTGTGAAGCCCTGCGTTATTCCTAGGCCTGAGGGATGCACTCACGTCTGTCCTAGCGTCTGCCATAAAGCTCCGTGCAAACCTTGCAAACAGATCGTTAGACTACCTTGTCATTGCGCTATCAATAGCTTGTATATCAGATGCTCTGAACTTACTTCTGCCAATCTGGAAGCTAGGAGAGAGATGTTCAAGTGCGGAAATCAATGTCCTAAGAATTATCCATGTGGACATCGATGTGCCGAGGATTGTCATCCAGGTCCATGCAACGGTGCGGAAAATTGTAATAAGAAAGTAAAACTATGGTGTAAGTGTAAGAGATTGAAGAAAGACTTCACTTGTATTGTCGTAAGATCGGGAGAGGCTGTTGTTAAGTGCGACGATGTTTGTCAGGAGAAAAAGAAAGAGAGAATTCAAGCCCAGGAGGCTGAGTTAGCCAAGAAAAGAAGAGAGGAGGAACTACGGAACCAAAGAGAGGTGGAAAAGTTTGAAAGAAAATTTAAACCCAGACGTAAATGTAGGGATAAATCGTTGGACGAACCCCAAGTTAAGGAAAGAAAATTTGGTTATTTAATATGGCTCGCAGCTGTATTTTTAATCGGCATAGCTTGTCTAGTCACTTTTTACGGTGTTCAGACATAA
- Protein Sequence
- MRKFKRAQAQNQAAIERHMETYPLVESSSDEEDETGQEMLEKAVGKVLTSYQDQGGDSEKILSYLEDTFQSNGAVCLICISSVKKTDSIWSCGRCYSFMHLPCIQHWIRDSLTYKRDRGISQFWACPKCRTEYEEAEAPKDYECFCGKTRDPPYQPWCVPHSCGEACGKDLQPKCGHSCVLLCHPGPCPPCPKMVTSKCYCCKQSPKARRCNAKEWSCGEICGKDLNCGKKHTCKETCHSGDCPPCPEKISASCHCGNKTEMKSCSDSIWQCDKPCRKLLSCKVHVCQGVCHLPNDCGDCLTARNRTCPCGKRRYKISCEQEASTCGDTCGKLLDCGSHYCNKRCHADSCGQCLEVVTKSCKCGSHKKEIACAKVFHCEIKCKQIRLCGRHPCNKKCCDCVKKNNFHACEKTCDRTLSCRKHKCSAPCHSGPCYPCPRTDTIQCRCGSSKIVIPCGTAKKIKPPHCNKMCKIPPICHHPKRESHKCHQGQCPPCRKQCALTHKKCGHICPAPCHTKVWVKVNGITQPAGPWEKQKDKMQLKTLPCPPCQVSVMVTCLGGHETLPWPCHRAVSSSCQRECGRVLDCTNHSCTFLCHVVKAAGDTGDATVCEECVKPCVIPRPEGCTHVCPSVCHKAPCKPCKQIVRLPCHCAINSLYIRCSELTSANLEARREMFKCGNQCPKNYPCGHRCAEDCHPGPCNGAENCNKKVKLWCKCKRLKKDFTCIVVRSGEAVVKCDDVCQEKKKERIQAQEAELAKKRREEELRNQREVEKFERKFKPRRKCRDKSLDEPQVKERKFGYLIWLAAVFLIGIACLVTFYGVQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01049321; iTF_00719882; iTF_01412780; iTF_01413837; iTF_00060782; iTF_00174703; iTF_01414639; iTF_00719058; iTF_01200594; iTF_01411987; iTF_00176084; iTF_00175447; iTF_00940057; iTF_00939197; iTF_01048574;
- 90% Identity
- iTF_01412780; iTF_01411987; iTF_00940057; iTF_01414639; iTF_01413837; iTF_00939197;
- 80% Identity
- -