Rchl007910.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000027.1:1981508-1994982[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-07 0.024 14.9 0.1 44 121 31 110 28 144 0.72 2 3 0.11 3.8e+03 -2.3 0.4 461 473 151 163 127 168 0.60 3 3 1e-06 0.036 14.3 0.0 323 381 182 241 177 250 0.80
Sequence Information
- Coding Sequence
- ATGATTCACACGCCGATGATGGGTTACCGGGTTACCGCTGGTTCCCCACCTACCCATGACACCTGGTGCAACGTTAATCCGGATTCTCAAGATCGAACAACCCAACAGATACAATCAAAGTTGGGTAATTATTCCCTGGTAAAACACCTACTGGATGAACCAAAAAGGCTGATCGGAATCGAAGGTGTACCCCCGAGTCCGGGTCCCTTAGCTCAACGTAAGCCAGTTACTCAAGAATTCAAAAAGCCTGGGGGACCTCGTCCAAATTCAAACAGTACACACAGCTCTCAAAATAGTGGTTACGTTAAACCAGCTGATGGCAAACCGCCCCATATGGGAAGAGGTTGTTATCCTGGTCAACCGGTCAAGCATGGTGGTGGCAGTAACGATCATCGAAGTCACGGTCTTATGCCAGCTAAAGGTCCTCCTAATCCTGCAGCAAGAGGAGGAGGAGGAAGTGGAAGTGGAAGTGGAAGTGGAAGTGGAAGTAGCGGAGGAAATAACGCCGGTGTAGGAGGAGTAGGAGCAGCCGGAAGATTGCAAAATGCAGGAAGTCATCTCTCCAGATTACCTATGGACAACGGTGCAATGTCCCGTCATTCCGCGACCGAGAATGCTGCAGACTTGGACAACATTCTCAAGGAGATGGCGCTTCCAATTACACCACTGACAGCTATAGCCCAAACCCCACGCAAAGAAACAGAGTCAAAATTTACCTTCAACCCATACCTCGCCAAGCTGACTGAAGTCCCGCAACCAGAGCTCGCCAAAACTCGTGAGTACATCTAA
- Protein Sequence
- MIHTPMMGYRVTAGSPPTHDTWCNVNPDSQDRTTQQIQSKLGNYSLVKHLLDEPKRLIGIEGVPPSPGPLAQRKPVTQEFKKPGGPRPNSNSTHSSQNSGYVKPADGKPPHMGRGCYPGQPVKHGGGSNDHRSHGLMPAKGPPNPAARGGGGSGSGSGSGSGSSGGNNAGVGGVGAAGRLQNAGSHLSRLPMDNGAMSRHSATENAADLDNILKEMALPITPLTAIAQTPRKETESKFTFNPYLAKLTEVPQPELAKTREYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411500; iTF_01200141; iTF_01413170; iTF_00939542; iTF_00938683; iTF_01412315;
- 90% Identity
- iTF_01412315;
- 80% Identity
- -