Ppra060175.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621262.1:13791686-13793944[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-09 6.2e-07 31.0 0.0 1 42 18 59 18 62 0.90
Sequence Information
- Coding Sequence
- aTGCCTCGcaaatatattagaaaggtTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATACGCTAACAAAAATACGGAAAAACTGACATTAGgaaaaCACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTAATAAGGAGACTCGAAAGGCTGGGCCGCATTGGTTAAGATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGAATGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAAACAGGTGTCCAGTTAAATAACTCTACTGGTAAAGTCATTGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTTTATCGGTAGTAGCATGCTGCAATGCTGTAGGGAACTTTCTTCCCCCAGTAGTCATCATCAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCGGCTTATGGTATTTACCCTTTCAATCCCTCTGCAGTTTCAGAGAGCTTTTTTGCAATATCTGATATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACTGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAACGTTACTCCtaattatatggatattttttatagaaatgaAGAAGCTCTTGAGCAGGAACCAGGTCTATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCATAGTTTCTCCTTGTAATACAGATCGACCAGATAGAAGATTTTCTAATTCAAGCCCATCAATTCTTTCAcagaataataacattataaacatTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTaaacactaaagaaaatattgaaGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAAGAATAcgttgtaaaaataaatgtcgaACAGCTAAAGCTGACGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGtattaagaaaagaaaaggcattagaGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGGTGAAATTGAtctgcataaaaaaaaacagagatCTCAAGCTAAGATTCAGAGTAAAGTTCcagcaaaaaataataagaaaagacgAATAGAATACAAGGAGTCGAGTGATGAAATATCGATATCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTTTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTTTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATGAATGCGGTAGGATTAAACGAATGAATACGAAAAAAACACCGTAG
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRYANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFNKETRKAGPHWLRSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTENDLLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVVACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAAYGIYPFNPSAVSESFFAISDISLSNQRPTEDNAGENDAPELEQVSSNRSSPVVDRVLSNVTPNYMDIFYRNEEALEQEPGLSNVQTLGVGLNLSIVSPCNTDRPDRRFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNTKENIEAKKSKVKGKATPRIRCKNKCRTAKADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDSDIDQARAGEIDLHKKKQRSQAKIQSKVPAKNNKKRRIEYKESSDEISISNNSDESESEAYKDWECKECFEEYKKTKSTADWIQCLMCKKWLHEDCTMYGDYCNECGRIKRMNTKKTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264391; iTF_00281117; iTF_01363043; iTF_00281113; iTF_00123296; iTF_00111588; iTF_00111587; iTF_01440971; iTF_00037733; iTF_01424992; iTF_01534737; iTF_01264470;
- 90% Identity
- iTF_01424992;
- 80% Identity
- -