Alot013735.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376233.1:15388660-15390956[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 4.8e-07 29.9 0.0 1 42 18 59 18 62 0.89 2 2 7.9 2.7e+03 -1.4 0.1 14 23 142 150 136 152 0.71
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGGAATACACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAAGAGACTCGAAAGGCTGGGCCGCATTGGTTAACATCATTTTTAGAATGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAATTAAATAACTCTACTGGAAAAGTCATAGCTACAAAAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTTTATCAGTAATAGCATGCTGCAATGCTGTGGGGAACTTTCTTCCCCCAGTAGTCATCATTAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCGTACGTGAATGCTGAATTATTTCACAAGTGGCTGAAAGAACATCTTGTACCTAAAAAACCAATAGGAAAGATTATTTTGATTCTGGATGTTCCAGAGAGCTTTTTTGCAATATCTGACATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACCGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAACGTTACTCCTAATTATATGGATATTTATTATAGAAATGAAGAAGCTCTTGAGCAGGAACCAGGTCCATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCAACGTTTCTCCTTGTAATACGGATCAACCAGATAGGAGATTTTCTAATTCAAGCCCATCAATTCTTTCACAGAATAATAATATTATCAACATTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAACAGTAAAGAAAATATTGAAGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATACGTTGTAAAAATAAATGTCGAACAGCTACAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGTATTAAGAAAAGAAAGGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGGTGAAATTGTTCTACATAAAAAAAAACAGAGATCTCAAGCTAAGATTCAGAGTAAAGTTCCAGCAAAAAATAATAAGAAAAGACGAATAGAATACAAGGAGTCGAGTGATGAAATATCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTCTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTTTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATAAATGCGGTAGGATTAAACGAATGAATACGAAAAAATACAAGTAG
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGIHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLTSFLECNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKLNNSTGKVIATKGARVVHSITSGEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAYVNAELFHKWLKEHLVPKKPIGKIILILDVPESFFAISDISLSNQRPTEDNAGENDAPEPEQVSSNRSSPVVDRVLSNVTPNYMDIYYRNEEALEQEPGPSNVQTLGVGLNLSNVSPCNTDQPDRRFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNSKENIEAKKSKVKGKATPGIRCKNKCRTATADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDSDIDQARAGEIVLHKKKQRSQAKIQSKVPAKNNKKRRIEYKESSDEISISNNSDESESEAYKDWECKECSEEYKKTKSTADWIQCLMCKKWLHEDCTMYGDYCNKCGRIKRMNTKKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264393;
- 90% Identity
- iTF_00281117; iTF_01363043; iTF_00281113;
- 80% Identity
- -