Aepo009849.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382248.1:14690568-14692864[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.5e-10 3.7e-07 30.1 0.0 1 42 18 59 18 62 0.89 2 3 4.7 2.1e+03 -1.1 0.0 13 22 132 141 132 144 0.88 3 3 5 2.2e+03 -1.1 0.1 14 23 142 150 136 152 0.71
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCCATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGGAAAACACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTAATAAGGAGACTCGAAAGGCTGGGCCGCATTGGTTAAGATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATATAGATGAAACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATCGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGCTGAAAAAGGTGAAACTTTATCGGTAATAGCATGCTGCAATGCTGTAGGGAACTTTCTTCCCCCAGTAGTCATCATCAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCAAATGAAGAAGCTCTTGAGCAGGAACGAGGTCCATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCAACGTTTCTCCTTGTAATACGGATCGACCAGATAGGAGATTTTCTAATTCAAGCCCATCAATTCTTTCACAGAATAATAATATTATAAACATTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAACACTAAAGAAAATATTGAAGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATACGTTGTAAAAATAAATGTCGAACAGCTAAAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATTTATTAAGAAAAGAAAAGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGCAAAAAATAATAAGAAAAGACGAATAGAATACAAGGAGTCGAGTGATGAAATATCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTTTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTGTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATGAATGCGGTAGGATTAAACGAATGAATACGAAAAAAACACCGTAG
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFNKETRKAGPHWLRSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNIDETGVQLNNSTGKVIATRGARVVHSITSAEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSANEEALEQERGPSNVQTLGVGLNLSNVSPCNTDRPDRRFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNTKENIEAKKSKVKGKATPGIRCKNKCRTAKADVQKKVLRTAVKFPKKIPAKFIKKRKGIRESSDEMTISDISNESDSDIDQARAAKNNKKRRIEYKESSDEISISNNSDESESEAYKDWECKECFEEYKKTKSTADWIQCVMCKKWLHEDCTMYGDYCNECGRIKRMNTKKTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264393;
- 90% Identity
- -
- 80% Identity
- -