Basic Information

Insect: Xestia xanthographa
Gene Symbol: -
Assembly: GCA_905147715.1
Location: LR990657.1:7503534-7507077[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.1e-09 1.3e-06 30.0 0.0 1 42 18 59 18 62 0.89

2 3 6.2 7e+03 -1.2 0.0 13 22 132 141 132 144 0.88

3 3 6.5 7.4e+03 -1.2 0.1 14 23 142 150 136 152 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.1e-09	1.3e-06	30.0	0.0	1	42	18	59	18	62	0.89
2	3	6.2	7e+03	-1.2	0.0	13	22	132	141	132	144	0.88
3	3	6.5	7.4e+03	-1.2	0.1	14	23	142	150	136	152	0.71

Sequence Information

Coding Sequence: ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaACACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAAGAGACTCGAAAGGCTGGGCCGCATTGGTTAACATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAAAGCATGACTTACTGGATAAACCGGATAGGATTTACAATATAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATAGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGTTCCAGAGAGCTTTTTTGCAATATCTGACATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACCGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAACGTTACTCCTAATTATATGGATATTTATTATAGAAATGAAGAAGCTCTTGAGCAGGAACCAGGTCCATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCAACGTTTCTCCTTGTAATACGGATCAACCAGATAGGAGATTTTCTAATTCAAGCCCATCAATTCTTtcacagaataataatattatcaacATTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAACAGTAAAGACAATATTGAAGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATACGTTGTAAAAATAATTGTCGAACAGCTACAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGTATTAAGAAAAGAAAGGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTTAGATATCGACCAGGCGAGAGCAGGTGAAATTgttctacataaaaaaaaacagagatCTCAAGCTAAGATTCAGAGTAAAGTTccagcaaaaaataataagaaaagaCGAATAGAATACAAGGAGTCGAGTGATGAAATATCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTCTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTTTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATAAATGCGGTAGGATTAAACGAATGAATACGAAAAAATACAAGTAG
Protein Sequence: MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLTSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTKHDLLDKPDRIYNIDETGVQLNNSTGKVIATRGARVVHSITSGEKVPESFFAISDISLSNQRPTEDNAGENDAPEPEQVSSNRSSPVVDRVLSNVTPNYMDIYYRNEEALEQEPGPSNVQTLGVGLNLSNVSPCNTDQPDRRFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNSKDNIEAKKSKVKGKATPGIRCKNNCRTATADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDLDIDQARAGEIVLHKKKQRSQAKIQSKVPAKNNKKRRIEYKESSDEISISNNSDESESEAYKDWECKECSEEYKKTKSTADWIQCLMCKKWLHEDCTMYGDYCNKCGRIKRMNTKKYK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01264393;
90% Identity: -
80% Identity: -