Slit006747.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:1425769-1428172[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-09 3.7e-06 26.4 0.0 1 42 32 73 32 76 0.89 2 2 3.7 1.5e+03 -1.1 0.0 14 23 156 164 149 166 0.70
Sequence Information
- Coding Sequence
- ATGTTTGCATACCTAATATGTTCCCATTTCTTCTTTTCAGACATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGGTCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATGGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaacACCCACTTCTTGATTTTGAAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGTGACATGATTCGAAGATTAGCCTTCGAGTTTGCTGAAAAACTGGGTAAAgaaaccaattttaatcaagAGACTCGAAAGGCTGGGCCGCATTGGTTAAGATCATTTTTAGAACGTAATACAGAGTTAAGTATTCGTCAAGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTGAATCGAGATGAAGTCAACAAAATGTTTGAACTACTGCTTAAGGTAATGACTGAGCATGACTTACTGAATAAACCGGATAGAATTTACATCGTAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATTGCCACAAGAGGCGCAAGAGTAGTCCATTCTGTAACTTCTGGTGAAAAAGGTGAAACTTTATCGGTAATAGCATGCTGCAATGCTGTAGGGAACTTTCTTCCCCCAGTAGTCATCATCAAGGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCGGGATCAGAAGTCTATATGAACAGAAAATCCGCGTACGTGAATGCTGAATTATTTCACAAGTGGCTAAAAGAACATCTGGTACCTAAAAAACCAATAGGAAAGATTATTTTGATTCTGGATGTTCCAGAGAGCTTTTTTGCAATATCTGACATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACCGGAACAAGTTTCATCTAGTAGATCAAGCCCTGTAGTTGATCGAGTTCTTTCCAACGTTACTCCTAATTATatggatatttttaatagaactgAAGAAGCTCTTGAGCAGGAACCAGTTCCATCTAATGTACAAACTCTGGGAAGTGATCTAAATCTATCCAACGTTTCTCCTTGTAATACGGATCGACCAGATAGGAGATTTTCTAATTCAAGCCCATCAATTCTGTcacagaataataatattatcaacattGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTCCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAAcactaaagaaaatattgaagcGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATacgttgtaaaaataaatgccAAACAGCTAAAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAAAAGATTCCAGCCAAATGTATTAAGAAAAGAAAAGGCATTAGAGAATCTAGTGATGAGACGACCATCTCGGATATTTCTAATGAATCTGATTCAGATTTCGACCAGGCGAGAGTAAGTGAAATTGATTTGCATAAAAAAAACAGAGATCTCAAGCTAAGAATCAGAGTAAAGTTCCAACTAAAACTTATAAGAAAAGACGAATAG
- Protein Sequence
- MFAYLICSHFFFSDMPRKYIRKVGVRSRAEWTQEALIAAMDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFENEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFNQETRKAGPHWLRSFLERNTELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLNKPDRIYIVDETGVQLNNSTGKVIATRGARVVHSVTSGEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAYVNAELFHKWLKEHLVPKKPIGKIILILDVPESFFAISDISLSNQRPTEDNAGENDAPEPEQVSSSRSSPVVDRVLSNVTPNYMDIFNRTEEALEQEPVPSNVQTLGSDLNLSNVSPCNTDRPDRRFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNTKENIEAKKSKVKGKATPGIRCKNKCQTAKADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDETTISDISNESDSDFDQARVSEIDLHKKNRDLKLRIRVKFQLKLIRKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264393;
- 90% Identity
- iTF_00037733;
- 80% Identity
- -