Pvib002525.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- stc
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000017.1:1004977-1008872[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.86 2.1e+04 -3.9 1.6 15 19 256 260 255 260 0.81 2 15 0.05 1.3e+03 0.0 0.1 4 10 290 296 289 297 0.94 3 15 2.3e-07 0.0058 17.1 14.2 3 19 310 326 309 326 0.93 4 15 0.32 7.9e+03 -2.5 1.2 15 18 335 338 334 339 0.83 5 15 3.2e-06 0.081 13.4 11.5 1 19 369 387 369 387 0.98 6 15 0.62 1.5e+04 -3.4 0.6 5 10 417 422 417 422 0.85 7 15 1.1e-07 0.0027 18.2 9.3 4 19 435 450 428 450 0.87 8 15 1 2.5e+04 -4.1 2.3 6 10 479 483 478 483 0.88 9 15 0.00021 5.2 7.7 8.4 1 11 489 499 489 500 0.97 10 15 0.73 1.8e+04 -3.7 1.5 4 10 504 510 503 510 0.86 11 15 5.1e-08 0.0013 19.2 10.8 1 18 516 533 516 534 0.97 12 15 0.37 9.3e+03 -2.7 0.8 6 10 563 567 562 568 0.72 13 15 1 2.5e+04 -5.3 9.9 8 18 579 590 570 591 0.75 14 15 2.7e-05 0.68 10.5 10.5 1 16 627 642 627 653 0.88 15 15 1e-05 0.26 11.8 13.8 1 19 659 678 659 678 0.97
Sequence Information
- Coding Sequence
- ATGAGccaaaatttggaagaaattttcaccagAGCAGCTAGTTCTAATTTAACAGCCACAGCTGTAGAATTTGTTCCCAGAACGACGTCCAATTATTCTAACAATCGTAATTCAAATTCTACAGATATGGATAACGATAGATATGATAACAGAAATCAAAGATATTACGATAGGAGGAATCCGTACTACGATAATAATTCTTATTACAACCGTGGCCGAAATGTAAATAGTCAATCGACGAGTAATTCTTACGCTAATAAATCTGCTCCAAAGGGTAGAGATAGAAGAAATGAGTACGATAATACATCAACAGGATCTTCTAATTATTATGGTGGTTCAAGCTATTCTCGGTATGATAATTCAAAGCGATACCCTTCGGATTATAAAAACAATTACAGAAATCACCCTGTGAAAAAAAGAGATTATGATGAAAACGATGACGAATATGACGACAGATATCAACAAACCACCCGCTATAATGTTTATGAAAATCGTAACCATAGATcaaattctaataatttttctcacaaatccAACGACGTGAATGGATCCGTGAATAACATCAATAAAAaaaaatcaacaatttgtCAACGAGAAAGATTAACCGAGCAGTTGAATGACGGAATTCTAGAATGTTTAGTTTGTTGCGAACGAATCAAACAGCGTGAATCTGTTTGGAGTTGTTCGAATTGTTATCACGTTCTGCACCTGTGGTGTATCACTAAATGGGCCAAGTCTTCCAAAAATGACAATAATAACTGGAGATGTCCAGCATGTCAAAACGAAAGCGTCCAGATACCTGAAAAATACATGTGTTTTTGTGGTAAATCGAGACTCCAGACTGAATGGAATCGTAACGATACGGCACATtcttgcggtgaaatatgtggaaaaaGTAAAGAGAATCCGACGCCTTGGTTTATATGCGAACACAAATGTAACTTACTATGTCATCCTGGGCCTTGCCCTTCGTGTACTATTCAAGTTACTCGGGAATGTGGATGTGGTCCTTGCTATTGTAATAAGTCGAAGAAAGAGTTCACCTGTGGTTCGCAAGAGCATGAAAGTTTCAGTTGCGGAGAAAAATGCGATAAAACGCTGACTTGTGGCAATCATAAATGTGATCTGATATGCCATCAGGAAGAATGTGGTCTTTGTCCGAGATCACCCATCGTAGTGAATTCATGCTGTTGTGGTAAGACTCCTTTGACGGAAAATTCCCGTCAGTCGTGTCTGGATCCGATGCCAACCTGTGGCCAGATTTGTGGAAAGCGTTTATCTTGTGGATCGATGaACAAACCACATTTTTGCGAATCTGTTTGTCATGATGGAGACTGTAGCCCTTGTAAGAAGAACACGTTGATGAAATGTCGATGCGGAGGTAAAGAGATGTCGATACCGTGTTCTGAAATCGATAAAAAGACAGGGTTCGAATGCCAGAAGAAATGTAACAAGAAACGATCGTGTGGAAAACACAAATGCAATCAGCTTTGTTGTATCGATGTGGAGCATATTTGTCCTCAACGTTGTAGCGGTACACTGAGCTGTGGAAAGCACCGATGTGATATTTTATGTCATCGGGGCAAATGTGGGCGTTGTCTGCAAAGCAGTTTTGAAGAACTATACTGCCACTGTGGTCATTCTGTGATTTATCCACCAGTTCCTTGCGGAACTAAACCTCCATCTTGTGATCAACCTTGTCGACGTCAACACGACTGCGAACATCAACCTTTACACGTTTGCCATTCCGATCGAGCTTGCCCACCTTGTATTGTATTCACCGATAAGCTTTGTTACGGTGGTCACGAGttacgTAAAACCATTCCGTGTTACCAAAAAGAGTTCTCTTGTGGGCTTCCTTGCGGTCAACCGCTACCCTGCGGTTTTCACAAATGTCAAGTACCATGCCACCCGAACGATTGTTTGACCGCTACGAAGAAATGTACACAGCCCTGTACGAAACCTCGTGATTTATGCGGGCATCCTTGTAATGCCCCTTGTCATACCGGATTTTGCCCCGATACACCTTGTCGAGAAATGGTCAAAGTAACCTGCGCTTGCGGTAATTTAGTCGCCGATCATCACTGCTACGAACACACAGATGATTACAGGCGTATCGTATCTGCAACCCTGGCGGCTAAAATGAACGAATTACAGTTAGAGAATTCGGTCAATTTACAAGACATGTCGGATAGAATTAATgccgaaaaaatcaacttgcGGACGCTCGAATGCTCGGACGAATGCAAGTTGATAATGCGAAATCGTCGATTAGCTTTAGCTTTGCAAATTCAAAATCCAGACTTGAGCGCCAAATTGACTCCGAGGTTTTCCGATTTTATGAAAGGCTGGGCTAAGAAAGATCCTACTTTTTGTCGTCATGTTCACGATAAACTCACAGCTTTGGTCAAGTTGGCTAAAGAGTCTAAACAGAAAAGTAGAAGTTACTCGTTCGAAGTGATGAATAAAGAAAAACGTCAATTCGTTCACGAATATTGTGCTCATTTCGGCTGTGAATCGGAAGCATATGATGCTGAACCGAAAAGAAACGTAGTTGCTATTGCTGTCAAAGGAAGGtgCTGGTTACCTGCCTATTCGGTGTTGGAAGTTTTGCAACGAGAAAGTGGCCAACGTAAGGTACCATTACCGGTactcaacaataaaaaatccaaaaatgagAACGATACATCTAACGGCATGCCACCGACAATAATTCTACCAGTGTTACCAAGTGCTAGCTCCAATTCGAGATTTAATTATTTCGGAGATTGA
- Protein Sequence
- MSQNLEEIFTRAASSNLTATAVEFVPRTTSNYSNNRNSNSTDMDNDRYDNRNQRYYDRRNPYYDNNSYYNRGRNVNSQSTSNSYANKSAPKGRDRRNEYDNTSTGSSNYYGGSSYSRYDNSKRYPSDYKNNYRNHPVKKRDYDENDDEYDDRYQQTTRYNVYENRNHRSNSNNFSHKSNDVNGSVNNINKKKSTICQRERLTEQLNDGILECLVCCERIKQRESVWSCSNCYHVLHLWCITKWAKSSKNDNNNWRCPACQNESVQIPEKYMCFCGKSRLQTEWNRNDTAHSCGEICGKSKENPTPWFICEHKCNLLCHPGPCPSCTIQVTRECGCGPCYCNKSKKEFTCGSQEHESFSCGEKCDKTLTCGNHKCDLICHQEECGLCPRSPIVVNSCCCGKTPLTENSRQSCLDPMPTCGQICGKRLSCGSMNKPHFCESVCHDGDCSPCKKNTLMKCRCGGKEMSIPCSEIDKKTGFECQKKCNKKRSCGKHKCNQLCCIDVEHICPQRCSGTLSCGKHRCDILCHRGKCGRCLQSSFEELYCHCGHSVIYPPVPCGTKPPSCDQPCRRQHDCEHQPLHVCHSDRACPPCIVFTDKLCYGGHELRKTIPCYQKEFSCGLPCGQPLPCGFHKCQVPCHPNDCLTATKKCTQPCTKPRDLCGHPCNAPCHTGFCPDTPCREMVKVTCACGNLVADHHCYEHTDDYRRIVSATLAAKMNELQLENSVNLQDMSDRINAEKINLRTLECSDECKLIMRNRRLALALQIQNPDLSAKLTPRFSDFMKGWAKKDPTFCRHVHDKLTALVKLAKESKQKSRSYSFEVMNKEKRQFVHEYCAHFGCESEAYDAEPKRNVVAIAVKGRCWLPAYSVLEVLQRESGQRKVPLPVLNNKKSKNENDTSNGMPPTIILPVLPSASSNSRFNYFGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00725967; iTF_01491550; iTF_00194863; iTF_01472854; iTF_01263034; iTF_01150911;
- 90% Identity
- -
- 80% Identity
- -