Fvir006397.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ferrisia virgata
Gene Symbol
stc
Assembly
GCA_900060175.1
Location
FIZR01028705.1:39330-43274[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.9 1.8e+04 -4.0 1.6 15 19 255 259 254 259 0.81
2 15 0.05 1e+03 0.0 0.3 4 10 289 295 288 296 0.94
3 15 1.2e-07 0.0023 18.0 15.5 3 19 309 325 308 325 0.93
4 15 1.1e-08 0.00022 21.3 9.9 1 18 361 378 361 379 0.98
5 15 2.4e-06 0.047 13.9 11.6 1 19 417 435 417 435 0.98
6 15 0.091 1.8e+03 -0.8 0.5 5 10 465 470 465 471 0.95
7 15 1.9e-06 0.038 14.2 9.1 4 18 483 497 476 498 0.87
8 15 1 2e+04 -4.2 2.3 6 10 527 531 526 531 0.88
9 15 0.00022 4.4 7.6 8.4 1 11 537 547 537 548 0.97
10 15 1 2e+04 -4.4 1.5 4 10 552 558 552 558 0.86
11 15 5.4e-08 0.0011 19.1 10.8 1 18 564 581 564 582 0.97
12 15 0.39 7.8e+03 -2.8 0.7 6 10 611 615 610 617 0.67
13 15 1 2e+04 -6.4 10.4 8 18 627 638 618 639 0.66
14 15 2.8e-07 0.0057 16.8 8.2 1 16 675 690 675 700 0.91
15 15 1.1e-05 0.22 11.7 14.7 1 19 707 726 707 726 0.97

Sequence Information

Coding Sequence
ATGAGCCAGaatttagaagaaatttttacaagagcAGCCAGTTCAAATTTAACAGCTACAGCTGAAGAGTTTGTGCCTAGAACGGCttcgtattcattttcaaatcgtaATTCTAATTTTGTGGATGTGGATAACGATAgatATGATAACAGAAACCAGAGATATGGTAAAAGATACCCGCATTATGAAAGTAATTCTTATCATAATCGTGGCCGAAACGTTCATTCTTCAGGTAATTCCTACGTTAGTAAATCCGTTCCAACGGGTAGAGATAAAAGAAATGAATCAGATAATTTGTCAACGGGATCATCAAGTTATTACAGCAGTTCCTTTAATTCTCGATACGATAATTCGAAGCGACACCCGtcggaaaataaaaataattacaGAAAtcaccatttcaaaaaaagagaataccACGATaaagatgatgaaatttatgaaGATGGGTACCAGCAAAACAATCACCatgtagtttttgaaaataaaaactatagATCAAATTCTTCCAATCATTacacaaataaatttaaagataCGATTGCACCAGTCGATGACATCagtaaaaaaaaatcaaccatttgTCAAAGAGAAAGATTAACGGAACAGCTGAACAAAGGTATTTTAGAATGTTTGGTGTGCTGTGAACAGATTAAACAACGTGAGCCAGTTTGGAGTTGCTCTAATTGTTATCATGTTCTACACCTGTATTGTATAACTAAATGGGCCAAATCTTCTAAAAAcgACCATAATAACTGGAGGTGTCCAGCATGTCAGAATGAAAACGTTCAGATACCTGAAAAATACATGTGTTTTTGTGGTAAATCTAGACTGCAAACTGAATGGAATCGTAATGATACAGCTCATTCTTGCGGTGAAACATGCggtaaaagtaaagaaaatccTACTCCTTGGTTCATATGTGAACATAAGTGCAACTTGTTATGCCATCCCGGACCTTGTCCACCATGCACTATCCAAGTCACTCGGGAATGTGGATGTAGTCGAACTAGCAGAACTGTACAATGTAGCTTTAAGACACCAATAATTTGTGGAGCGGTTTGCGATCGTTTGTTAAACTGCGGTGTTCATCGATgtttaaaaacatgtcacttTGGAGAATGTGAACCTTGTGATATAAAAGTGGAAATAGCGTGCTATTGCaataaattaaagaaagaTTTGACCTGTGGCTCACAAGATCTAGAGAGTTTCAGTTGTGGagaaaaatgtgacaaaacaTTAATCTGCGGAAATCATAAATGTGATTTGTTATGCCATCAAGAGGAATGTGGACTTTGTCCAAGATCACCAGTTGTTGTGAATTCATGTTGTTGCGGTAAAACTCCTTTAACGGAGAATACCCGTCAATCGTGTTTAGATCCGATGCCTACATGTGAAAAGATTTGCGGCAAGCGGTTACCTTGTGGTTCAGCTAATAAACCTCATTTTTGCGCATCCATTTGCCATGATGGTGAGTGCAGtccttgtgaaaaaaatacactgaTGAAATGCCGATGTGGAGCTAAAGAAATGTCGGTACcgtgttcaaaaataaatgaaaatgctGTATTTGAATGTcagaaaaaatgcaataagaaaagaTCGTGTGGTAAACATAAATGCAATCAACTTTGTTGTATCGATGTGGATCACATTTGTCCTCAGCGTTGTAGTGGTACATTGAGTTGTGGCAAACACCGATGCGATATCTTATGTCATCGGGGCAAATGTGGACGTTGCTTACAAAGCAGCTTTGAAGAACTTTATTGTCATTGTGGTCATTCGGTGATTTATCCACCTGTACCATGTGGAACAAAACCTCCTGCTTGTGATCAACCCTGTCAACGTCAACATGAATGTGAACATTCGCCTTTACACGTTTGTCACTCCGATCGTACATGTCCTCCTTGTATCGTATTCACCGACAAACTCTGCTATGGTGGTCACGAaTTACGTAAAACTATCCCCTGTTaccaaaaagaattttcttgTGGATTACCTTGCGGCCAACCTTTACCTTGCGGATTTCATAGATGTCAAGTATCATGTCACGCTGGTGATTGTTTAACTGCTTCGAAGAAATGTACGCAACCTTGTATGAAATCTCGAGATTTATGCGGACATCCTTGTAACGCTCCTTGTCATACTGGATATTGTCCTGATACACCGTGTAAAGAGATGGTTAAAGTGACCTGTGCTTGTGGTAATCTGGTTGCTGATCACCACTGTTACGAGCATACAGATGATTACAAACGTATCGTATCGGCTACGTTGGCTGCTAAAATGAACGAATTACAACTAGAAAATTCCGTTAACATACAAGATATATCTGATAAGATTAATGCTGAAAAGATTAACTTGAGAACGCTCGAATGTTCGGACGAGTGTAAATTAATCATGCGAAATCGTCGATTAGCTCTAGCATTGCAAATCCAAAACCCAGATTTGAGCGCTAAATTAACGCCACGGTATTCCGATTTTATGAAAAGTTGGGCGAAGAAAGATCCTAATTTTTGTCGTCACGTTTACGATAAACTTACAGCTTTAGTTAAATTGGCCAAAGAGTCCAAACAAAAAAGTAGAAGTTTTTCATTCGAAGTgatgaataaagaaaaacgtcAGTTCGTACATGAATATTGTGCTCATTTCGGCTGTGAATCGGAAGCATACGATGCGGAACCAAAAAGAAATGTAGTTGCTATTGCTGTTAAAGGAAGGTGCTGGTTACCTGCATATTCGTTATTGGAAGTTTTACAACGAGAAAGTGGTCAACGTAAGGTACCATTACCTGTgttaaataataagaaatcTAAAATGGAAAACGATGCATCCAATGGTATACCGCCGACAATAATTCTACCTGTGTTACCAAGCTCCAGCTCCAATTCTAGATTCAATTATTTCGGAGATTAA
Protein Sequence
MSQNLEEIFTRAASSNLTATAEEFVPRTASYSFSNRNSNFVDVDNDRYDNRNQRYGKRYPHYESNSYHNRGRNVHSSGNSYVSKSVPTGRDKRNESDNLSTGSSSYYSSSFNSRYDNSKRHPSENKNNYRNHHFKKREYHDKDDEIYEDGYQQNNHHVVFENKNYRSNSSNHYTNKFKDTIAPVDDISKKKSTICQRERLTEQLNKGILECLVCCEQIKQREPVWSCSNCYHVLHLYCITKWAKSSKNDHNNWRCPACQNENVQIPEKYMCFCGKSRLQTEWNRNDTAHSCGETCGKSKENPTPWFICEHKCNLLCHPGPCPPCTIQVTRECGCSRTSRTVQCSFKTPIICGAVCDRLLNCGVHRCLKTCHFGECEPCDIKVEIACYCNKLKKDLTCGSQDLESFSCGEKCDKTLICGNHKCDLLCHQEECGLCPRSPVVVNSCCCGKTPLTENTRQSCLDPMPTCEKICGKRLPCGSANKPHFCASICHDGECSPCEKNTLMKCRCGAKEMSVPCSKINENAVFECQKKCNKKRSCGKHKCNQLCCIDVDHICPQRCSGTLSCGKHRCDILCHRGKCGRCLQSSFEELYCHCGHSVIYPPVPCGTKPPACDQPCQRQHECEHSPLHVCHSDRTCPPCIVFTDKLCYGGHELRKTIPCYQKEFSCGLPCGQPLPCGFHRCQVSCHAGDCLTASKKCTQPCMKSRDLCGHPCNAPCHTGYCPDTPCKEMVKVTCACGNLVADHHCYEHTDDYKRIVSATLAAKMNELQLENSVNIQDISDKINAEKINLRTLECSDECKLIMRNRRLALALQIQNPDLSAKLTPRYSDFMKSWAKKDPNFCRHVYDKLTALVKLAKESKQKSRSFSFEVMNKEKRQFVHEYCAHFGCESEAYDAEPKRNVVAIAVKGRCWLPAYSLLEVLQRESGQRKVPLPVLNNKKSKMENDASNGIPPTIILPVLPSSSSNSRFNYFGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01264087;
90% Identity
-
80% Identity
-