Plon005830.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- stc
- Assembly
- GCA_900064475.1
- Location
- FIZU01015804.1:3736-7644[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.9 2.1e+04 -4.0 1.6 15 19 249 253 248 253 0.81 2 15 0.062 1.5e+03 -0.2 0.3 4 10 283 289 282 289 0.94 3 15 2.4e-07 0.0057 17.0 14.2 3 19 303 319 302 319 0.93 4 15 2.2e-09 5.2e-05 23.6 9.6 1 18 355 372 355 373 0.98 5 15 3.4e-06 0.08 13.4 11.5 1 19 411 429 411 429 0.98 6 15 0.06 1.4e+03 -0.2 0.5 5 10 459 464 459 465 0.96 7 15 1.1e-07 0.0027 18.1 9.2 4 19 477 492 470 492 0.87 8 15 1 2.4e+04 -4.2 2.3 6 10 521 525 520 525 0.88 9 15 0.00022 5.1 7.6 8.4 1 11 531 541 531 542 0.97 10 15 0.77 1.8e+04 -3.7 1.5 4 10 546 552 545 552 0.86 11 15 5.3e-08 0.0013 19.1 10.8 1 18 558 575 558 576 0.97 12 15 0.46 1.1e+04 -3.0 1.1 6 10 605 609 604 610 0.69 13 15 1 2.4e+04 -5.3 9.9 8 18 621 632 612 633 0.75 14 15 0.0001 2.4 8.6 7.4 1 16 669 684 669 695 0.88 15 15 7.5e-06 0.18 12.3 15.1 1 19 701 720 701 720 0.96
Sequence Information
- Coding Sequence
- ATGAGCCAAAAtttagaagaaattttcaccagaGCAGCTAGTTCTAATTTAACAGCCACAGCTGTAGAATTCGTACCTCGAACCCAGTCTAATTCTAATACCAACCGTAATTCAAATTCGTCAGATATGGATAACGATAAATATGATAACAGAAATCAAAGATATTACGATAGAAGAAATCCGTactatgaaaataattcttattACAATCGAGGTCGAAATGGGCAATCATCGAGTAATTCATACGTTAataaatccaattccaagggtagagATAGAAGAAATGAACCAGATAATTATTCAACAGGATCTTCTAATTATTACGGTGGTTCAACCAATTCTCGGTATGATAATTCAAAGAGATACCCTTCAGATTATAAAAACAAAAAAAGAGAAtacaatgatgaaaatgatgaagaatATGACGACAGATATCAACAAAGCACCCGTTataacgtttttgaaaatcgtaacTATAGATCGAATTCTTCCAATAATTTCGTTAATAAATCTAACGATACGAATGGATCCGTAAATAACACCAATAAAAaaaaatcaacaatctGTCAACGAGAAAGATTGACGGAACAGTTGAACGAAGGAATTTTAGAATGTTTAGTTTGCTGCGAAAGAATCAAACAGCGCGAATCTGTTTGGAGTTGTTCGAATTGTTATCACGTTCTGCACCTGTGGTGTATCACTAAGTGGGCCAAGTCTTCCAAAAATGACAATAATAACTGGAGATGTCCGGCATGTCAAAATGAAAGCGTGCAGATACCTGAAAGATACCTATGTTTTTGTGGCAAATCTAGACTCCAAAGTGAATGGAATCGTAACGATACGGCTCATTCCTGCGGCGAGATATGCGGTAGAAGTAAAGAAAATCCGACACCTTGGTTTATATGCGAACACAAGTGTAACTTGCTATGTCACCCTGGACCTTGTCCTTCGTGTACTATTCAAGTAACCCGGGAATGTGGATGCGGTCGTACTACGAGAACTGTGCAGTGTAGCTTTAAAACTCCAATACTTTGTGGAGCAGTTTGCGATCGTTTGTTGAATTGCGGTATTCATCGGTGTTTGAAAACATGCCATTTTGGAGAATGTGAACCCTGtgatacgaaaattgaaattgCATGCTATTGTAATAAATCGAAGAAAGAGTTAATCTGTGGTTCGCAAGAacaagaaaaattcagttgtggagaaaaatgtgacaaaactTTGACCTGTGGCAATCATAAATGTGATTTGATATGCCATCAGGAAGAATGTGGTCTTTGCCCAAGATCGCCTATCGTAGTGAATACATGTTGTTGCGGTAAAACTCCTTCAACAGAAAATACCCGTCAGTCGTGTTTGGATCCGATGCCAACATGTGAGCAAATTTGTGGAAAGCGTTTGCCTTGTGGGTCGATAAACAAACCTCATTTTTGCGAATCTGTTTGTCACGATGGAGATTGTAATCCTTGCAAGAAAAATACATTGATGAAATGTCGATGCGGAGGTAAAGAAATGTCAATACCGTGttctaaaattgataaaaatgcgGAATTTGaatgtcagaaaaaatgtaacaagaaACGGTCATGTGGAAAACACAAATGCAACCAGCTTTGTTGCATCGATATAGAGCATATTTGCCCTCAGCGTTGCAACGGTACATTGAGCTGCGGCAAGCACCGATGTGATATTTTATGTCATCGCGGCAAATGTGGACGTTGCTTGCAAAGCAGTTTCGAAGAACTGTATTGTCACTGCGGTCATTCGGTCATTTATCCACCAGTACCTTGTGGAACAAAACCTCCATCATGTGATCAACCTTGTCAACGTCAGCATGACTGCGAACATCAGCCTTTACACGTTTGTCATTCCGATCGAGCTTGTCCACCATGTATTGTATTTACTGACAAGCTTTGTTACGGCGGTCACGAGctaCGCAAGACCATTCCTTGTTACCAAAAAGAGTTCTCTTGTGGTCTGCCATGTGGGCAACCGCTGCCTTGCGGATTTCACAAATGTTTAGTACCATGCCACGCAAACGATTGTTTGACCGCTTCGAAGAAATGTACTCAGCCTTGTACGAAACCTCGTGATTTATGCGGGCATCCGTGCAATTCCCCATGTCACTCCGGATATTGTCCCGAAACACCTTGTCGAGAAATGGTCAAAGTGACTTGCGCTTGTGGTAATTTAGTCGCCGATCATCACTGTTACGAACACACAGACGATTACAGGCGTATCGTATCTGCAACCCTGGCAGCCAAAATGAACGAACTGCAGTTGGAGAATTCAGTCAATATTCATGATATATCGGATAAAATTAATGCCGAAAAGGTCAACCTGAGGACGCTCGAGTGCTCGGACGAATGCAAGTTGATTATGCGAAATCGTCGACTGGCTTTAGCTCTGCAAATACAAAATCCAGATTTGAGTGCTAAATTGACTCCGCGGTTTTCcgatttcattaaaagttGGGCTAAAAAAGATCCTAATTTTTGTCGTCATGTTCATGATAAACTTACAGCTTTAGTAAAGTTGGCGAAAGAGtCTAAACAGAAAAGTAGAAGTTTCTCGTTCGAAGTTATGAATAAAGAAAAACGTCAATTCGTTCACGAATATTGTGCTCATTTCGGCTGTGAATCGGAAGCATACGATGCTGAACCGAAAAGAAACGTTGTTGCTATTGCTGTCAAAGGAAGGtGCTGGTTACCTGCTTATTCGGTTTTGGAAGTCTTGCAACGAGAAAGTGGCCAACGTAAGGTACCATTACCAGTgctcaataataaaaaatttaaAAATGAGAACGATACATCTAACGGTATGCCACCGACAATAATCTTACCTGTGTTACCAAGTGCTAGCTCCAATTCGAGATTTAATTATTTCGGAGattga
- Protein Sequence
- MSQNLEEIFTRAASSNLTATAVEFVPRTQSNSNTNRNSNSSDMDNDKYDNRNQRYYDRRNPYYENNSYYNRGRNGQSSSNSYVNKSNSKGRDRRNEPDNYSTGSSNYYGGSTNSRYDNSKRYPSDYKNKKREYNDENDEEYDDRYQQSTRYNVFENRNYRSNSSNNFVNKSNDTNGSVNNTNKKKSTICQRERLTEQLNEGILECLVCCERIKQRESVWSCSNCYHVLHLWCITKWAKSSKNDNNNWRCPACQNESVQIPERYLCFCGKSRLQSEWNRNDTAHSCGEICGRSKENPTPWFICEHKCNLLCHPGPCPSCTIQVTRECGCGRTTRTVQCSFKTPILCGAVCDRLLNCGIHRCLKTCHFGECEPCDTKIEIACYCNKSKKELICGSQEQEKFSCGEKCDKTLTCGNHKCDLICHQEECGLCPRSPIVVNTCCCGKTPSTENTRQSCLDPMPTCEQICGKRLPCGSINKPHFCESVCHDGDCNPCKKNTLMKCRCGGKEMSIPCSKIDKNAEFECQKKCNKKRSCGKHKCNQLCCIDIEHICPQRCNGTLSCGKHRCDILCHRGKCGRCLQSSFEELYCHCGHSVIYPPVPCGTKPPSCDQPCQRQHDCEHQPLHVCHSDRACPPCIVFTDKLCYGGHELRKTIPCYQKEFSCGLPCGQPLPCGFHKCLVPCHANDCLTASKKCTQPCTKPRDLCGHPCNSPCHSGYCPETPCREMVKVTCACGNLVADHHCYEHTDDYRRIVSATLAAKMNELQLENSVNIHDISDKINAEKVNLRTLECSDECKLIMRNRRLALALQIQNPDLSAKLTPRFSDFIKSWAKKDPNFCRHVHDKLTALVKLAKESKQKSRSFSFEVMNKEKRQFVHEYCAHFGCESEAYDAEPKRNVVAIAVKGRCWLPAYSVLEVLQRESGQRKVPLPVLNNKKFKNENDTSNGMPPTIILPVLPSASSNSRFNYFGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264087;
- 90% Identity
- -
- 80% Identity
- -