Pmar007323.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- stc
- Assembly
- GCA_900065295.1
- Location
- FIZT01034714.1:17836-21758[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.9 1.9e+04 -4.0 1.6 15 19 254 258 253 258 0.81 2 15 0.053 1.1e+03 -0.0 0.1 4 10 288 294 287 295 0.94 3 15 2.4e-07 0.0052 17.0 14.2 3 19 308 324 307 324 0.93 4 15 2.2e-09 4.7e-05 23.5 9.6 1 18 360 377 360 378 0.98 5 15 3.4e-06 0.072 13.4 11.5 1 19 416 434 416 434 0.98 6 15 0.06 1.3e+03 -0.2 0.5 5 10 464 469 464 470 0.96 7 15 9.9e-08 0.0021 18.3 9.2 4 19 482 497 475 497 0.87 8 15 1 2.1e+04 -5.0 2.2 6 10 526 530 526 530 0.94 9 15 0.00022 4.6 7.6 8.4 1 11 536 546 536 547 0.97 10 15 0.77 1.6e+04 -3.8 1.5 4 10 551 557 550 557 0.86 11 15 5.4e-08 0.0011 19.1 10.8 1 18 563 580 563 581 0.97 12 15 0.51 1.1e+04 -3.2 1.0 6 10 610 614 609 615 0.66 13 15 1 2.1e+04 -6.2 10.8 9 18 627 637 617 638 0.72 14 15 1.6e-07 0.0034 17.6 10.0 1 16 674 689 674 700 0.89 15 15 4.2e-06 0.088 13.1 10.9 1 18 706 724 706 725 0.90
Sequence Information
- Coding Sequence
- ATGAGccaaaatttggaagaaattttcacaagagCAGCTAGTTCTAATTTAACAGCCACTGCTGTAGAGTTCGTACCCAGAACAGCGTCAAATTTTTCCGACAGTCGTAATTCAAATTCGACGGACATGGATTATAATAGGTATGATAACAGAAATCAAAGATACGATAAAAGATATCCGTACTATGAGAACAATTCATATTACAATCGTGGCCGGAATGGGCAGTCGAGTAACTCTCACGTTGGTAAATCGGCATCAAAAGGTAGGGATCGAAGGAATGAATTTGATAATGGATATGCGGAGTCTTCCAGTTACTACGGTGGCGCTACTAATTCTCGGTTTGACAATTCTAAGCGATATTCTTCGGATCCTAAGAACAATTACAGGAATAATCATGTAAAGAAAAGAGATTACAATGACGAAGATGATGAAGAGTTTGATGACAGATATCAGCAGCATTCCCGTTACAGTGTATATGAAAACCGAAACTATAGGTCGAATTCTTCCAATAACTCTACAAATAAATCTTACGTCGTGAATGGATCCGTTAATAACATcaataaaaaaaaaactaCGATATGTCAAAGAGAAAGGTTGACAGAACAGTTGAACGAAGGTATTTTAGAATGTTTAGTTTGCTGCGAACGGATTAAACAACGCGAAGCTATTTGGAGCTGTTCGAATTGCTATCACGTTCTACACCTGTGGTGTATCACTAAATGGGCCAAGTCTTCCAAAAACGACAATAATAACTGGAGATGTCCAGCTTGTCAAAATGAAAGCGTCCAGATACCTGAAAAATACATGTGTTTCTGTGGTAAATCTAGAATGCAAATGGAATGGAATCGTAACGACACGGCTCATTCTTGCGGTGAAATATGCGGTAAAAGTAAAGAGAATCCGACAACATGGTTCATATGTGAACATAAATGTAACTTATTATGCCACCCTGGACCTTGCCCTTCATGTACCATTCAAGTGACTCGcgaatgcGGGTGTGGCCGAAGTACTAGAACCGTACAATGTAGTTTTAAAACTCCAATTCTTTGTGGAGCAGTTTGCGATCGGTTATTGAACTGCGGTATTCATCGGTGTTTGAAAACATGCCATTTTGGAGAGTGTGAACCTTGTGATTTGAAAAcagaaattgCGTGCTATTGTAATAAACTGAAGAAAGAGTTGACCTGTGGGTCGCAaggggaagaaaattttagctgtGGAGAGAAATGCGATAAAACTTTAACTTGTGGCAATCATAAATGTGATCTGATTTGTCACCAAGAAGAGTGTGGCCTCTGTCCGAGATCACCAATCGTAGTAAACTCATGCTGCTGTGGCAAAACTCTTGTAACAGAAAATACTCGTCAGTCGTGTCTGGATCCGATGCCAACATGTGAGCAGATTTGTGGAAAACGTTTACATTGTGGGTCGGCAAatAAACCTCATTTTTGCGAATCGGTCTGTCATGACGGTGACTGTGCgccttgtaaaaaaaatacattcatgAGGTGTCGATGTGGAGCGAAAGAAATGTCGATACCTTGCTCCGAACTCAATAAAAATGCCGAATTTGTGtgtcaaaaaaagtgtaataagAAACGATCGTGTGGAAAGCATAAATGCAATCAGCTTTGTTGTATTGACGCAGAACATATTTGCCCTCAACGCTGTAGCGGTACTTTGAGTTGTGGTAAACACCGATGCGATATTTTGTGTCATCGAGGCAAATGTGGACGTTGCTTGCAAAGCAGTTTTGAAGAACTATTTTGCCATTGCGGTATTTCTGTGATTTACCCACCGGTACCGTGCGGAACAAAACCACCCGCTTGCGATCAGCCGTGTCAACGCCAACATGACTGCGAACATCCACCACTACACGTTTGTCATTCTGATCGTTCTTGTCCGCCTTGTATAGTATTTACTGATAAGCTTTGCTACGGTGGCCATGAGttgCGCAAAACCATTCCTTGTTATCAAAAAGAGTTTTCTTGCGGGCTACCATGTGGTCGACCACTACCGTGCGGATTTCACAAATGTCAAGTACCGTGTCACGCCGGCGACTGCTTGACCgcttcgaaaaaatgtactcAGCCTTGTACAAAACCTCGCGATTTATGTGGACACGCTTGTAACGCGCCCTGTCACACCGGATATTGTCCCGATACAGCTTGCCGTGAAATGGTCAAAGTAACTTGCGCTTGCGGTAATTTAGTCGCCGATCATCACTGTTACGAGCATACCGATGACTATAGACGTATCGTATCTGCAACCTTGGCGGCCAAGATGAACGAATTgcagttggaaaattcgatcagTTTACAAGACATatcggaaaaaatcaacgcagaaaaaatcaacttgaggacCCTCGAATGCTCTGACGAGTGCAAGTTGATCATGCGAAATCGGCGATTAGCGTTGGCTTTGCAAATACAGAATCCAGACTTGGGTGCCAAGTTAACTCCGCGGTATTCCgatttcatgaaaagttgGGCTAAAAAAGATGCCAATTTTTGCCGCCACATTCACGATAAACTTACGGCTTTAGTGAAATTAGCTAAAGACTCAAAACAGAAGAGTAGAAGTTTCTCGTTTGAAGTTATGAATAAAGAGAAACGTCAATTCGTACACGAATACTGTGCTCATTTCGGCTGTGAATCAGAAGCATACGACGCAGAACCGAAAAGAAACGTGGTTGCTATTGCTGTCAAAGGAAGGTGCTGGTTGCCTGCTTACTCGGTGCTGGAAGTTTTGCAACGCGAAAGTGGTCAGCGTAAGGTGCCTTTACCAGTgttcaataataaaaaatccagAAACGAGAGCGATCCGTCGAGTGGATTACCGCCGACTATAATCCTACCCGTGTTACCAAGTGCTAGCTCGAATTCAAGATTCAATTATTTCGGAGattga
- Protein Sequence
- MSQNLEEIFTRAASSNLTATAVEFVPRTASNFSDSRNSNSTDMDYNRYDNRNQRYDKRYPYYENNSYYNRGRNGQSSNSHVGKSASKGRDRRNEFDNGYAESSSYYGGATNSRFDNSKRYSSDPKNNYRNNHVKKRDYNDEDDEEFDDRYQQHSRYSVYENRNYRSNSSNNSTNKSYVVNGSVNNINKKKTTICQRERLTEQLNEGILECLVCCERIKQREAIWSCSNCYHVLHLWCITKWAKSSKNDNNNWRCPACQNESVQIPEKYMCFCGKSRMQMEWNRNDTAHSCGEICGKSKENPTTWFICEHKCNLLCHPGPCPSCTIQVTRECGCGRSTRTVQCSFKTPILCGAVCDRLLNCGIHRCLKTCHFGECEPCDLKTEIACYCNKLKKELTCGSQGEENFSCGEKCDKTLTCGNHKCDLICHQEECGLCPRSPIVVNSCCCGKTLVTENTRQSCLDPMPTCEQICGKRLHCGSANKPHFCESVCHDGDCAPCKKNTFMRCRCGAKEMSIPCSELNKNAEFVCQKKCNKKRSCGKHKCNQLCCIDAEHICPQRCSGTLSCGKHRCDILCHRGKCGRCLQSSFEELFCHCGISVIYPPVPCGTKPPACDQPCQRQHDCEHPPLHVCHSDRSCPPCIVFTDKLCYGGHELRKTIPCYQKEFSCGLPCGRPLPCGFHKCQVPCHAGDCLTASKKCTQPCTKPRDLCGHACNAPCHTGYCPDTACREMVKVTCACGNLVADHHCYEHTDDYRRIVSATLAAKMNELQLENSISLQDISEKINAEKINLRTLECSDECKLIMRNRRLALALQIQNPDLGAKLTPRYSDFMKSWAKKDANFCRHIHDKLTALVKLAKDSKQKSRSFSFEVMNKEKRQFVHEYCAHFGCESEAYDAEPKRNVVAIAVKGRCWLPAYSVLEVLQRESGQRKVPLPVFNNKKSRNESDPSSGLPPTIILPVLPSASSNSRFNYFGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264087;
- 90% Identity
- iTF_01472854; iTF_00194863; iTF_01491550;
- 80% Identity
- -