Pazu001344.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000036.1:412137-426879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0085 0.46 11.3 1.7 1 23 357 380 357 380 0.92 2 12 0.0005 0.027 15.2 1.3 2 23 383 404 382 404 0.97 3 12 0.00014 0.0075 16.9 0.1 1 23 411 433 411 433 0.98 4 12 4.6e-07 2.5e-05 24.7 1.3 1 23 439 461 439 461 0.99 5 12 0.00021 0.011 16.3 2.5 1 23 468 490 468 490 0.98 6 12 2.3e-06 0.00012 22.5 1.5 1 23 496 518 496 518 0.97 7 12 5.6e-05 0.003 18.1 0.2 1 23 524 546 524 546 0.97 8 12 2.4e-05 0.0013 19.3 0.8 1 23 552 575 552 575 0.97 9 12 0.00073 0.039 14.6 1.8 1 23 581 604 581 604 0.95 10 12 2.3e-05 0.0012 19.4 1.0 1 23 610 632 610 632 0.98 11 12 0.00012 0.0067 17.1 0.5 1 23 638 660 638 660 0.96 12 12 0.0019 0.1 13.3 0.2 1 22 666 687 666 690 0.92
Sequence Information
- Coding Sequence
- ATGGAATCTGTTCGCTGTTATTTGTGCGACCATGAGTTTGTGGAAGGCGAAGAGCCGTGGTTGATGTTTGAGCAAAGATTACGTGAGGATGGACAAGTGGAATGTTCATTAGCCGATTTGTTGGGTACTATATTGGAAAAGAATTTGGAAGAAGCTCTTGCCCATTCTACATTATTGTGTGATTCCTGCAATGCTGATGTATTGGAATATGAAAGTCTTGAGAAACGTTTTTCTCAGATAAGAGAAAGAATTCTAAGTTCTTACAAGGAGAATTCTACAATACAAAATTTGAATAATCTGATCCATAACACATCTATTAGCAATGGAGATGACGCAGGTAACAAGCTGTTGATTGAAAATCATGAAGTCATGGATATTTCAAATTCAGAATTTGCTGGTATTACGGACTTGGATTTAGTTGAAGAAGTTCAGGATGAAGACCTTGAAAGTGAAGAGAATGCAAATGATAATGTAATAGGAAATGACCATGTGCTAGATCATGGGGATGTGGGATTCGTCGATAATGCTAGTTCTCAGATAATAACTGATCATTCCGATTTTGCTGCTTTCAATGAACATGTGGCCCAAAATTCTCTACCCTCTGGTGTATTGAATTTATCAGATGGTCTGGTTAATTTAGAGGTTTCAGAAAAGTCTATAGATGTCCAAGATATACCATTAGAAGGTCAAGACATAATTATATATGATGTCAACACGGACCAGATACAACAAGGCGATATAATTGTTCAGCAAGATAATGATAGTGCTGATTTAAAAAAATATGTCAGCACTGAAGATGATGATCTTAATTTTATAATTAGCTCGGACATTTTTACAAGTGAAGGTAACTGTGAAGAATCACAACATTCAACCTCATCAGTAGTTGTATCGGCTGATAATAATGAAAAAAACCACACTGCACTTTCTGCTCAGTCTGCACCGATTGCTCCTATACCGGTTTGCAAGAAAGATGGTGATTTCTTTATTTGCCTTCTTTGTGAGATATCACCACAATTTGAACGTCATACGTTGATAGAACATTTTCAAACATTTCATAATTCTAAATTTCACATGTGTGAACAGTGTCATGAGGGATTTGGAAGACGACAAGATCTAAAAACACATTCAGAAATCGGTCATGTAATACAATGTGAATTTTGCGAAAGAACTTTCATCTCCAATCGTCTTTATCGTGTCCACAAACGTATGCACTATAATAATACTAAACCCTTCGAATGTCCGGTATGTCAGAAAATGTATGTATCCAAAGCGATATTGGAAGAACACATGAACACTCATACCGGTGTTAGACCCTTTAAATGCACTGAATGTCCCAAAGATTTTGCTTCGAAATATACGCTGCAGACACATATGAAAATTCATAAGGAACGACCGcgtccctaccagtgcgatcagtgcgacaaacgttttttgaatcaacaaaatctaaatcaacataaaaaactgcatgtttcagtgaaagcttttcaatgtgacgtgtgcaacaaagcgttcaccactcagcatagtttgcaagttcataaaatagtgcattctggtcagaggccatttatttgtcgcatttgtgggaaatcatttgcgcgaagacccgaaatcaaagatcatgaacgaattcatacaggagagaagccattcaaatgcgaatactgtcctatggcatttgcccagcgtaccaatttggccagtcacaaaaaatcaacacatttgaatgagaaattgcacaaatgtgacatatgtttgcgatcatttaagcgcaaacgtttgttggactatcacatacaggccattcatactggtgaaaggccgcataaatgtggaatatgtggagcaggatttgtttatccagaacattacaaaaaacatatgctcatacacagtggcaaaaagccgtatgcgtgcgaagtctgtggcaaacaattcaacagccgtgacaaccgtaatgctcatcgttttgtgcatagtgataagaaaccctacgaatgtatggaatgtggagcgggctttatgcgtaaacctcttcttctaacacatatgaagCAAACAAAACATATAAACGATAAAATAATTATAAATCAGCCTCAATTTACTCATCAGCACCCAGTGGAAACTGGCAGCATTTCCACTACCTCGACCTCTGTAGAGTTAGGTAATTTGCAGGAGGATGAATCGGAAATCGATGTTGACAATGATCTAAAGCCACAAGATGTCTCTGATAAAACACTTGATAAGATCATATTCAAAGCTGGGGATTTGTTAGCTGAAACTGTTTCAGTTTCTCCTAATATAGACAATGATGTCAACGATGATGATAACGTGATAACAGTTGTTGTAGATAATTTAATCAAGGGCGAACTGGACGATGTTAAATATTTAGAATTTGAAGACTTAGAACGTGAAGACCATCAAACGTTAACATGGGTGGATATAGGTGGCGATGATAAAGTTTGA
- Protein Sequence
- MESVRCYLCDHEFVEGEEPWLMFEQRLREDGQVECSLADLLGTILEKNLEEALAHSTLLCDSCNADVLEYESLEKRFSQIRERILSSYKENSTIQNLNNLIHNTSISNGDDAGNKLLIENHEVMDISNSEFAGITDLDLVEEVQDEDLESEENANDNVIGNDHVLDHGDVGFVDNASSQIITDHSDFAAFNEHVAQNSLPSGVLNLSDGLVNLEVSEKSIDVQDIPLEGQDIIIYDVNTDQIQQGDIIVQQDNDSADLKKYVSTEDDDLNFIISSDIFTSEGNCEESQHSTSSVVVSADNNEKNHTALSAQSAPIAPIPVCKKDGDFFICLLCEISPQFERHTLIEHFQTFHNSKFHMCEQCHEGFGRRQDLKTHSEIGHVIQCEFCERTFISNRLYRVHKRMHYNNTKPFECPVCQKMYVSKAILEEHMNTHTGVRPFKCTECPKDFASKYTLQTHMKIHKERPRPYQCDQCDKRFLNQQNLNQHKKLHVSVKAFQCDVCNKAFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEYCPMAFAQRTNLASHKKSTHLNEKLHKCDICLRSFKRKRLLDYHIQAIHTGERPHKCGICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDKIIINQPQFTHQHPVETGSISTTSTSVELGNLQEDESEIDVDNDLKPQDVSDKTLDKIIFKAGDLLAETVSVSPNIDNDVNDDDNVITVVVDNLIKGELDDVKYLEFEDLEREDHQTLTWVDIGGDDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259084; iTF_00045485; iTF_00259950; iTF_00921556; iTF_00922284; iTF_00200061; iTF_00331672; iTF_00350335;
- 90% Identity
- -
- 80% Identity
- -