Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000178.1:1510222-1514440[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.019 0.95 10.3 2.4 1 23 364 387 364 387 0.94

2 12 0.0002 0.0098 16.5 2.1 2 23 390 411 389 411 0.97

3 12 0.00015 0.0075 16.9 0.1 1 23 418 440 418 440 0.98

4 12 5.5e-07 2.7e-05 24.6 1.2 1 23 446 468 446 468 0.99

5 12 0.00024 0.012 16.3 2.1 1 23 475 497 475 497 0.98

6 12 2.1e-06 0.0001 22.8 2.4 1 23 503 525 503 525 0.97

7 12 6.2e-05 0.003 18.1 0.2 1 23 531 553 531 553 0.97

8 12 2.6e-05 0.0013 19.3 0.8 1 23 559 582 559 582 0.97

9 12 0.0028 0.14 12.9 2.1 1 23 588 611 588 611 0.95

10 12 1.4e-05 0.0007 20.1 1.2 1 23 617 639 617 639 0.98

11 12 0.00014 0.0066 17.0 0.5 1 23 645 667 645 667 0.96

12 12 0.0021 0.1 13.3 0.2 1 22 673 694 673 697 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.019	0.95	10.3	2.4	1	23	364	387	364	387	0.94
2	12	0.0002	0.0098	16.5	2.1	2	23	390	411	389	411	0.97
3	12	0.00015	0.0075	16.9	0.1	1	23	418	440	418	440	0.98
4	12	5.5e-07	2.7e-05	24.6	1.2	1	23	446	468	446	468	0.99
5	12	0.00024	0.012	16.3	2.1	1	23	475	497	475	497	0.98
6	12	2.1e-06	0.0001	22.8	2.4	1	23	503	525	503	525	0.97
7	12	6.2e-05	0.003	18.1	0.2	1	23	531	553	531	553	0.97
8	12	2.6e-05	0.0013	19.3	0.8	1	23	559	582	559	582	0.97
9	12	0.0028	0.14	12.9	2.1	1	23	588	611	588	611	0.95
10	12	1.4e-05	0.0007	20.1	1.2	1	23	617	639	617	639	0.98
11	12	0.00014	0.0066	17.0	0.5	1	23	645	667	645	667	0.96
12	12	0.0021	0.1	13.3	0.2	1	22	673	694	673	697	0.92

Sequence Information

Coding Sequence: ATGGAATCTGTTCGGTGTTATTTGTGCGACCATGAGTTCGTAGAAGGCGAAGAGCCATGGCTAATGTTTGAACAAAGACTACGTGAGGACGGACAAGTGGAATGTTCACTGGCTGATTTGTTGGGTACAATATTGGAAAAGAATTTGGAAGAGACTATAGCACATTCTACATTGCTGTGTGATTCCTGCAATGCAGATGTTTTGGAGTACGAAAGTCTTGAAAAGCGATTTTCACAGTTACGGGAAAGAATTTTGAGTTCATACAAACAAAATTCTACTATACAGAGTTTGTATAATTTGATACAAGGAACAGTCATAGACAATGGATCTCTGCCACATCAAGATGATGAAAATAATAAATTGCTAATTAACAATCCTGAAGTAATGGAAAATGTATCAAATCCAGAATATGCTGGTATTACGGAAATGGACTTAGTAGAGGAAGTTCAGGACGAAGAGCTGGAGTACGAAGAGGATTTACATGTAAATGTGCTACGAAAGGATCCTGTAGCAGATCATGGTGATGTTGGATTCGACGAACATGTTAATTCCGCGATCGTATCTGATCATTTCGATTTTGCCGCCTTCAATGAACATGTTGCCCAGAATTCCCTACCTTCTGGTGTGTTGAATTTATCAGATGGCCTTGTCAATATAGAAGTTTCGGAAAAGTCTATAGATGTTCAAGACATACCATTGGATGGCCAAGATATAATTATATATGATGTTAACGCAGAACAAATACAACAGGGCGATTTAATTATTCAACAAGATAACGATAGTTGTGATTTGAAAAATTATGATAGTACAGAAGACGATGATCTTAATTTTATAATAAGCACAGACATTTTCACAAGTGAAGGCAACTGTGAAGACTCCCAGCAATCCAATAACTCCGAAATAATAATTCCTAATGATAATGAACAACAGAACACTGTGACTTCTGAGACATCAACGCCACCAAATGCACCTAAACCGGTTTGCAAGCAAGATGGCGAATACTTCATCTGTCTTCTTTGTGAGATATCGCCACAATATGAACGTCACATACTGATAGAACATTTTCAAACATTTCACAATTCAAAATTTCATATGTGTGAACAGTGTCATCAGGGATTTGGAAAGCGACAGGACCTGAAAACACATACAGAGATCGGTCATATAATAAAGTGTGAGTATTGTGAACGTACATTCACCAATACTCGTTTGTATCGCATACACAAACGTATGCATTACAATAATACCAAACCATTCGAATGTCCTGTGTGCCAGAAAATGTATGTGTCCAAAGCGATTTTGGAAGAACACATGAACACGCATACTGGCGTAAGACCATTTAAATGCAGTGAATGCCCCAAAGACTTTGCCTCAAAATATACGCTGCAGACACATATGAAAATACACAAGGAACGGCCTCGGCCCTAccagtgtgatctgtgtgacaaacggtttttgaatcaacaaaatctgaatcaacataaaaaattgcatgtctcagtcaaagccttccagtgtgatgtgtgcaacaagacattcaccactcagcatagtttgcaagttcataaaatagtacattctggccagaggccctttatttgccgcatttgtggaaagtcatttgcgcgaaggccagaaatcaaagaccatgaacgcattcataccggtgagaagccattcaagtgtgaatactgtccaatggcctttgcccaacgcaccaatttggccagtcacaagaagtcaacacatttgaatgagaaattacacaaatgcgatctatgtttgcggtcatttaagcgcaaacgtttattagattatcatatacaggccattcatacaggagaacggccgcataaatgtgaaatatgtggagcaggttttgtctatccagaacattacaaaaaacacatgctcatacacagtggcaagaagccgtatgcatgcgaagtgtgtggcaaacagttcaacagccgtgacaatcgtaatgcccatcgttttgtgcacagtgataagaagccttacgaatgtatggagtgtggtgcgggatttatgcgcaaacccctccttctcactcatatgaagCAAACAAAACACATAAACGATACAATTATTATAAATCAGCCACAATTTACACAACAACAACCGATGGAAATTGGAAGCATCTCAACTACCTCATCCGTTGAGTACAATAATATGCACGAGGAAGAATCGGAAATCGATGTCGACAATGATCTAAGGTCACAAGAGGTCTCCGATGAGACCCTCGAAAAAATCATATTCAAAGCAGATGACTTATTGGCGGAGAATGTTTCAGTTTCATCAATTACAGACAAAGATGACGACGATGATGAAAATGTGATAACGTCCGTAGGTGATCATTTAATGAAAGGTGGTCTGGACGATGTCAAATATTTGGAATTTGAAGATTTAGAACGTGATGGCCATCAAACCTTGACGTGGGTGAACATAGGAGGCGATGATAAAGTTTAG
Protein Sequence: MESVRCYLCDHEFVEGEEPWLMFEQRLREDGQVECSLADLLGTILEKNLEETIAHSTLLCDSCNADVLEYESLEKRFSQLRERILSSYKQNSTIQSLYNLIQGTVIDNGSLPHQDDENNKLLINNPEVMENVSNPEYAGITEMDLVEEVQDEELEYEEDLHVNVLRKDPVADHGDVGFDEHVNSAIVSDHFDFAAFNEHVAQNSLPSGVLNLSDGLVNIEVSEKSIDVQDIPLDGQDIIIYDVNAEQIQQGDLIIQQDNDSCDLKNYDSTEDDDLNFIISTDIFTSEGNCEDSQQSNNSEIIIPNDNEQQNTVTSETSTPPNAPKPVCKQDGEYFICLLCEISPQYERHILIEHFQTFHNSKFHMCEQCHQGFGKRQDLKTHTEIGHIIKCEYCERTFTNTRLYRIHKRMHYNNTKPFECPVCQKMYVSKAILEEHMNTHTGVRPFKCSECPKDFASKYTLQTHMKIHKERPRPYQCDLCDKRFLNQQNLNQHKKLHVSVKAFQCDVCNKTFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEYCPMAFAQRTNLASHKKSTHLNEKLHKCDLCLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIINQPQFTQQQPMEIGSISTTSSVEYNNMHEEESEIDVDNDLRSQEVSDETLEKIIFKADDLLAENVSVSSITDKDDDDDENVITSVGDHLMKGGLDDVKYLEFEDLERDGHQTLTWVNIGGDDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259368;
90% Identity: iTF_00045485; iTF_00259084;
80% Identity: -